Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002646`

染色体: Chr07 坐标: 25598866-25606886 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002646`
名称	SmilChr07G002646
描述	uncharacterized SmilChr07G002646
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	25598866 - 25606886 / `-`

ID 对照

NCBI Gene ID	`LOC130993712`
GeneID	`130993712`
locus_tag	`-`
NCBI Name	`LOC130993712`
原始查询	`LOC130993712`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816683]; symbol=AT2G21440; hit=AT2G21440; species=arabidopsis; confidence=high
产物	RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816683]; symbol=AT2G21440; hit=AT2G21440; species=arabidopsis; confidence=high
Arabidopsis	`AT2G21440` (AT2G21440) RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816683] identity=45.5; qcov=1.09; evalue=0; confidence=high
Rice	`Os03g0801800` - identity=50.5; qcov=0.822; evalue=0; confidence=high
GO	GO:0003723 (RNA binding)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1)
InterPro	-
eggNOG	-
NR	GeneID:130993712

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057774719.1`
2	Nucleolus	核仁	1.00000	`XP_057774719.1`
3	Nucleolus rim	Nucleolus rim	0.40000	`XP_057774719.1`
4	Chromosome	染色体	0.00000	`XP_057774719.1`
5	Centromere	着丝粒	0.00000	`XP_057774719.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:25599143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,D10
`Chr7:25599199`	`GC`	`G`	1bp_deletion	frameshift_variant	7	B125,B42,B43,B89,B95,B99,C43
`Chr7:25599219`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B59
`Chr7:25599219`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr7:25599359`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,D10
`Chr7:25599365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,D10
`Chr7:25599378`	`G`	`A`	EMS_canonical_SNV	stop_gained	11	A22,A3,B110,B113,B36,B47,C20,C24,C52,C59,C9
`Chr7:25599450`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr7:25599500`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr7:25599576`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B32,C49,C50
`Chr7:25599576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B32,C49,C50
`Chr7:25599635`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B90,B92,C21,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774719.1

941 aa

470

941

RRM_1

PF00076 RRM_1 14-83 aa PF00076 RRM_1 265-334 aa PF00076 RRM_1 484-544 aa

XP_057774720.1

941 aa

470

941

RRM_1

PF00076 RRM_1 14-83 aa PF00076 RRM_1 265-334 aa PF00076 RRM_1 484-544 aa

XP_057774721.1

938 aa

469

938

RRM_1

PF00076 RRM_1 14-83 aa PF00076 RRM_1 262-331 aa PF00076 RRM_1 481-541 aa

XP_057774722.1

938 aa

469

938

RRM_1

PF00076 RRM_1 14-83 aa PF00076 RRM_1 262-331 aa PF00076 RRM_1 481-541 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774719.1`	Pfam	`PF00076`	RRM_1	Domain	14	83	2.6e-61	204.1	RNA recognition motif
`XP_057774719.1`	Pfam	`PF00076`	RRM_1	Domain	265	334	2.6e-61	204.1	RNA recognition motif
`XP_057774719.1`	Pfam	`PF00076`	RRM_1	Domain	484	544	2.6e-61	204.1	RNA recognition motif
`XP_057774720.1`	Pfam	`PF00076`	RRM_1	Domain	14	83	2.6e-61	204.1	RNA recognition motif
`XP_057774720.1`	Pfam	`PF00076`	RRM_1	Domain	265	334	2.6e-61	204.1	RNA recognition motif
`XP_057774720.1`	Pfam	`PF00076`	RRM_1	Domain	484	544	2.6e-61	204.1	RNA recognition motif
`XP_057774721.1`	Pfam	`PF00076`	RRM_1	Domain	14	83	2.5e-61	204.2	RNA recognition motif
`XP_057774721.1`	Pfam	`PF00076`	RRM_1	Domain	262	331	2.5e-61	204.2	RNA recognition motif
`XP_057774721.1`	Pfam	`PF00076`	RRM_1	Domain	481	541	2.5e-61	204.2	RNA recognition motif
`XP_057774722.1`	Pfam	`PF00076`	RRM_1	Domain	14	83	2.5e-61	204.2	RNA recognition motif
`XP_057774722.1`	Pfam	`PF00076`	RRM_1	Domain	262	331	2.5e-61	204.2	RNA recognition motif
`XP_057774722.1`	Pfam	`PF00076`	RRM_1	Domain	481	541	2.5e-61	204.2	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057918738.1
ATCTATAAGACCAAGCGCCGATTCTTGGCTTCTTCTTCATCTTCTTCTCTGCTCACACGCTTCATTTTTTTGAAATTGCATTTTGCTATCTAGAGTTTACAAAAGATGTGTGCAACTGCTTCGAAATCAACAAAACTCTGTAGCAGTTGCCGACGCCTCCCCAACCCAACGACTAATAGCAGGTAAACGAATGCAAATCTAAAAATGTGGGAGTGAAACAGCCGGCTTTGTTCAAGAAAACTAAGAGAAATTTTTGCGAA...

XM_057918736.1
ATCTATAAGACCAAGCGCCGATTCTTGGCTTCTTCTTCATCTTCTTCTCTGCTCACACGCTTCATTTTTTTGAAATTGCATTTTGCTATCTAGAGTTTACAAAAGATGTGTGCAACTGCTTCGAAATCAACAAAACTCTGTAGCAGTTGCCGACGCCTCCCCAACCCAACGACTAATAGCAGGTAAACGAATGCAAATCTAAAAATGTGGGAGTGAAACAGCCGGCTTTGTTCAAGAAAACTAAGAGAAATTTTTGCGAA...

CDS

4 records

下载 CDS FASTA

LOC130993712
ATGAAGGGTGGTGGTGAAAATCAGCAATCTCCTTCTACCATTTTCGTTGCGAATTTGCCGTTTTCATTAACTAACGCACAGTTGGAAGAAGCGTTCAGTGATGTCGGACCAATACGGCGATGCTTTATGGTTATGAAGAAGGGGTCCACTGAACACCGAGGATTTGGCTATGTTCAATTTGCTGTTGTTGAAGATGCTAATCGTGCCATTGAGCTGAAAAATGGTTCAACTCTTGGTGGTAGAAAGATTGTTGCTAAACT...

Protein

4 records

下载 Protein FASTA

XP_057774719.1
MKGGGENQQSPSTIFVANLPFSLTNAQLEEAFSDVGPIRRCFMVMKKGSTEHRGFGYVQFAVVEDANRAIELKNGSTLGGRKIVAKLATHRAPLEQRRAKENQGLVSQPEEAVQTKDDKAVETSVAEKPDKTPSIKGKGETREKRKRKDISTATPGEAKISEKQRVAKTVIFGSLLDIDMAEEVHRLAREIGTVCSVTYPLPEGELQHHGLAQDGCTMNASSVLYTSVKSARECVAALHQNEIQGRSVWARQLGGEGSKT...

XP_057774720.1
MKGGGENQQSPSTIFVANLPFSLTNAQLEEAFSDVGPIRRCFMVMKKGSTEHRGFGYVQFAVVEDANRAIELKNGSTLGGRKIVAKLATHRAPLEQRRAKENQGLVSQPEEAVQTKDDKAVETSVAEKPDKTPSIKGKGETREKRKRKDISTATPGEAKISEKQRVAKTVIFGSLLDIDMAEEVHRLAREIGTVCSVTYPLPEGELQHHGLAQDGCTMNASSVLYTSVKSARECVAALHQNEIQGRSVWARQLGGEGSKT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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