当前解析结果
SmilChr01G000920| 统一新 Gene ID | SmilChr01G000920 |
|---|---|
| 名称 | SmilChr01G000920 |
| 描述 | calmodulin binding protein PICBP-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 19430555 - 19432278 / - |
| NCBI Gene ID | LOC130993713 |
|---|---|
| GeneID | 130993713 |
| locus_tag | - |
| NCBI Name | LOC130993713 |
| 原始查询 | LOC130993713 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calmodulin binding protein PICBP-like |
| 产物 | calmodulin binding protein PICBP-like |
| Arabidopsis | AT3G54570 (AT3G54570)Plant calmodulin-binding protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:824622] identity=32.2; qcov=0.968; evalue=1.07e-45; confidence=low |
| Rice | Os05g0381700- identity=55.8; qcov=0.237; evalue=6.08e-31; confidence=weak |
| GO | GO:0005516 (calmodulin binding) |
| KEGG | - |
| Pfam | PF07839 (CaM_binding) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993713 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057774761.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057774761.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057774761.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057774761.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057774761.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:19431211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr1:19431217 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B137,B21 |
Chr1:19431260 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:19431271 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:19431535 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B120 |
Chr1:19431535 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B120 |
Chr1:19431626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr1:19431679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,B29 |
Chr1:19431699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr1:19431725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr1:19431753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr1:19431770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774761.1PF07839
CaM_binding 336-411 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774761.1 |
Pfam | PF07839 |
CaM_binding | Domain | 336 | 411 | 1.7e-26 | 94.0 | Plant calmodulin-binding domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。