Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G002661

染色体: Chr07 坐标: 25828757-25832749 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G002661
名称SmilChr07G002661
描述histidinol-phosphate aminotransferase, chloroplastic-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向25828757 - 25832749 / +

ID 对照

NCBI Gene IDLOC130993727
GeneID130993727
locus_tag-
NCBI NameLOC130993727
原始查询LOC130993727

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述histidinol-phosphate aminotransferase, chloroplastic-like
产物histidinol-phosphate aminotransferase%2C chloroplastic-like
ArabidopsisAT5G10330 (HPA1)
histidinol phosphate aminotransferase 1 [Source:NCBI gene (formerly Entrezgene);Acc:830897]
identity=74.9; qcov=0.974; evalue=0; confidence=high
RiceOs02g0709200
-
identity=76.1; qcov=0.941; evalue=0; confidence=high
GOGO:0000105 (L-histidine biosynthetic process); GO:0004400 (L-histidinol-phosphate:2-oxoglutarate transaminase activity); GO:0030170 (pyridoxal phosphate binding)
KEGGsmil00340 (Histidine metabolism - Salvia miltiorrhiza (redroot sage)); smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00960 (Tropane, piperidine and pyridine alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
PfamPF00155 (Aminotran_1_2)
InterPro-
eggNOG-
NRGeneID:130993727

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057774751.1
2 Chloroplast stroma 叶绿体基质 1.00000 XP_057774751.1
3 Nucleus 细胞核 0.00000 XP_057774751.1
4 Chromosome 染色体 0.00000 XP_057774751.1
5 Centromere 着丝粒 0.00000 XP_057774751.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:25830117 G A EMS_canonical_SNV CDS_variant 1 C60
Chr7:25830321 C T EMS_canonical_SNV CDS_variant 1 C50
Chr7:25830561 C T EMS_canonical_SNV CDS_variant 2 D10,D6
Chr7:25830862 C T EMS_canonical_SNV CDS_variant 3 B132,B26,D8
Chr7:25831182 G A EMS_canonical_SNV CDS_variant 5 B111,B126,B25,B46,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057774751.1
426 aa
N
1
213
426
Aminotran_1_2
C
PF00155 Aminotran_1_2 99-420 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057774751.1 Pfam PF00155 Aminotran_1_2 Domain 99 420 1.4e-51 176.6 Aminotransferase class I and II

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057918768.1
AATATGACAGAAAAAAAATATTTTCATACTGTAATTAAAAGCGCCGAATTACAGAAGTCCGGTTGAGTATATGTTTTCGAGGGAAGTTAAATACAAAAATCACATTAATCCAAAAACAGATGATTTTACCAAATTTCAGAAAATTATCCGAAGCGACAATGAAGGAAAGGAATTTATTGGCAAGAAAGGAAAATTGTAATTGATTTTAAAGTTTGGTCTTGTAGTGAAACTGTGTGGCTGCTACTTCCAGTTCCAACTAC...

CDS

1 records

下载 CDS FASTA
LOC130993727
ATGGGCGTGATCGAGTTGTTGTGCAAGACTTCATCACTTTGTGTAGACAGACCGATTCCTAGCCCCATTTGCGGTTCGTTTAAGGGGAATCTGAGGCGGAGTAGAATTACATTTAGGACCCCGCCGGCCTCCTCCTCAGCCGCCGCCGTTCCGATGACTGAGGAGAGCCCCAAGGAAGGAGGCGGCAAGTTGACTGGGGATTCATTTATTCGGCCGCATCTCCGTAAATTGTCCCCATATCAACCTATTCTCCCTTTCGA...

Protein

1 records

下载 Protein FASTA
XP_057774751.1
MGVIELLCKTSSLCVDRPIPSPICGSFKGNLRRSRITFRTPPASSSAAAVPMTEESPKEGGGKLTGDSFIRPHLRKLSPYQPILPFEVLSIRLGRKPEEIIKLDANENPYGPPPEVFEALGSLRFPYIYPDPESRRLRAALAEDTGLEADYILAGCGADELIDLIMRCVLEPGDKILDCPPTFTMYEFDAAVNGALVIKVPRKPDFSLDVDRIFEVVEQEKPKCIFLTSPNNPDGSIIDDETLVKILSLPILVVLDEAYI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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