Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003583`

染色体: Chr01 坐标: 54395530-54401672 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003583`
名称	SmilChr01G003583
描述	protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	54395530 - 54401672 / `+`

ID 对照

NCBI Gene ID	`LOC130993738`
GeneID	`130993738`
locus_tag	`-`
NCBI Name	`LOC130993738`
原始查询	`LOC130993738`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic-like
产物	protein ACTIVITY OF BC1 COMPLEX KINASE 8%2C chloroplastic-like
Arabidopsis	`AT5G64940` (ATH13) ABC2 homolog 13 [Source:NCBI gene (formerly Entrezgene);Acc:836618] identity=78.9; qcov=0.976; evalue=0; confidence=high
Rice	`Os02g0575500` (OsABC1-2) - identity=86.3; qcov=0.823; evalue=0; confidence=high
GO	GO:0046467 (GO:0046467); GO:1901031 (regulation of response to reactive oxygen species)
KEGG	-
Pfam	PF03109 (ABC1)
InterPro	-
eggNOG	-
NR	GeneID:130993738

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057774763.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057774763.1`
3	Chloroplast thylakoid	类囊体	0.40000	`XP_057774763.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057774763.1`
5	Nucleus	细胞核	0.00000	`XP_057774763.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:54395718`	`C`	`CA`	1bp_insertion	frameshift_variant	1	C58
`Chr1:54395718`	`C`	`CA`	1bp_insertion	CDS_variant	1	C58
`Chr1:54395877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr1:54395920`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr1:54395949`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B109,B34,C20
`Chr1:54395964`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:54396039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A23,C87
`Chr1:54396057`	`A`	`AC`	1bp_insertion	frameshift_variant	3	B58,B64,B94
`Chr1:54396057`	`A`	`AC`	1bp_insertion	CDS_variant	3	B58,B64,B94
`Chr1:54398543`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr1:54399593`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr1:54399611`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B109,B31,B34,C20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774763.1

752 aa

376

752

ABC1

PF03109 ABC1 251-498 aa

XP_057774767.1

752 aa

376

752

ABC1

PF03109 ABC1 251-498 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774763.1`	Pfam	`PF03109`	ABC1	Domain	251	498	2.1e-86	289.8	ABC1 atypical kinase-like domain
`XP_057774767.1`	Pfam	`PF03109`	ABC1	Domain	251	498	2.1e-86	289.8	ABC1 atypical kinase-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057918784.1
CTTCTCTCTCAGCCTCTCATTCTTCTTAATTCCATAATCAATTTAAAACTCAATGAAAAGAAAGAAATACTCTCTCCTCAGTTCTTGATGCTCTCTCAATTTCCTGCATAAGAACAAGATTTTTTGAGAATGGGCTTTTGGGTTCGTTGAGATTCAAGAAATCAGTTTTGTAAAGATGGCAACTTTATCAACTTCTTTCAGCACTCCTACTTTACCCGAACTGATATTTCTCTCTCCTCACAACTCAACGAAAAGACTCA...

XM_057918780.1
CTTCTCTCTCAGCCTCTCATTCTTCTTAATTCCATAATCAATTTAAAACTCAATGAAAAGAAAGAAATACTCTCTCCTCAGTTCTTGATGCTCTCTCAATTTCCTGCATAAGAACAAGATTTTTTGAGAATGGGCTTTTGGGTTCGTTGAGATTCAAGAAATCAGTTTTGTAAAGATGGCAACTTTATCAACTTCTTTCAGCACTCCTACTTTACCCGAACTGATATTTCTCTCTCCTCACAACTCAACGAAAAGACTCA...

CDS

2 records

下载 CDS FASTA

LOC130993738
ATGGCAACTTTATCAACTTCTTTCAGCACTCCTACTTTACCCGAACTGATATTTCTCTCTCCTCACAACTCAACGAAAAGACTCAAGCTTTCTCTCTCTAGAGCCGCCAGAGTTGAGCGCAGAACCAGAATCAGAGCTGTTCAGAGAGAAGAAAGCGTTGTTCTTGAAGAAAGTGACAGAGCATTGGCGGCTAAACTGAACGGCAGTGTTAATGGGAATTACAGTAACGGTAATGTTTCAGTTGGTAGTTATGGAAATGG...

Protein

2 records

下载 Protein FASTA

XP_057774763.1
MATLSTSFSTPTLPELIFLSPHNSTKRLKLSLSRAARVERRTRIRAVQREESVVLEESDRALAAKLNGSVNGNYSNGNVSVGSYGNGSVKVESENGSLAKYVNGNGNVDVGSGDVVLEAVEMEEVIGEKKSVEEIGQEEAWFKRSGGDQVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFIFRVWLNNQKFSYRGGMTDQKRVQRRKVLAKWLKENILRLGPTFIKIGQQFSTRVDILAQEYVDQLSELQDQVPPFPS...

XP_057774767.1
MATLSTSFSTPTLPELIFLSPHNSTKRLKLSLSRAARVERRTRIRAVQREESVVLEESDRALAAKLNGSVNGNYSNGNVSVGSYGNGSVKVESENGSLAKYVNGNGNVDVGSGDVVLEAVEMEEVIGEKKSVEEIGQEEAWFKRSGGDQVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFIFRVWLNNQKFSYRGGMTDQKRVQRRKVLAKWLKENILRLGPTFIKIGQQFSTRVDILAQEYVDQLSELQDQVPPFPS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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