当前解析结果
SmilChr07G000871| 统一新 Gene ID | SmilChr07G000871 |
|---|---|
| 名称 | SmilChr07G000871 |
| 描述 | uncharacterized SmilChr07G000871 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 6242570 - 6243870 / + |
| NCBI Gene ID | LOC130993757 |
|---|---|
| GeneID | 130993757 |
| locus_tag | - |
| NCBI Name | LOC130993757 |
| 原始查询 | LOC130993757 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670]; symbol=AT3G14470; hit=AT3G14470; species=arabidopsis; confidence=weak |
| 产物 | NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670]; symbol=AT3G14470; hit=AT3G14470; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=34.3; qcov=0.294; evalue=6.62e-10; confidence=weak |
| Rice | Os11g0688832 (PIK5-NP)- identity=36.1; qcov=0.272; evalue=8.98e-10; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993757 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057774777.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057774777.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057774777.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774777.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774777.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:6242767 |
TG |
T |
1bp_deletion | frameshift_variant | 13 | A2,A8,B104,B106,B31,B49,B60,C29,C37,C45,C60,C78,D5 |
Chr7:6242776 |
C |
CA |
1bp_insertion | frameshift_variant | 29 | A10,A22,B108,B109,B120,B132,B139,B18,B37,B40,B47,B54,B55,B57,B66,B74,C11,C23,C24,C31,C35,C5,C52,C53,C69,C75,C9,D7,D9 |
Chr7:6242871 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr7:6242875 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr7:6242879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr7:6243124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,B52,C40,C65 |
Chr7:6243375 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B11,C48 |
Chr7:6243375 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B11,C48 |
Chr7:6243511 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B128 |
Chr7:6243511 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B128 |
Chr7:6243561 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,B72 |
Chr7:6243637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,C1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。