当前解析结果
SmilChr07G000994| 统一新 Gene ID | SmilChr07G000994 |
|---|---|
| 名称 | SmilChr07G000994 |
| 描述 | uncharacterized SmilChr07G000994 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7230476 - 7231440 / - |
| NCBI Gene ID | LOC130993765 |
|---|---|
| GeneID | 130993765 |
| locus_tag | - |
| NCBI Name | LOC130993765 |
| 原始查询 | LOC130993765 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108]; symbol=AT3G09510; hit=AT3G09510; species=arabidopsis; confidence=weak |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108]; symbol=AT3G09510; hit=AT3G09510; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G09510 (AT3G09510)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108] identity=23.7; qcov=0.808; evalue=7.83e-09; confidence=weak |
| Rice | Os02g0118800- identity=26.2; qcov=0.836; evalue=2.48e-08; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993765 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057774785.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057774785.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057774785.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057774785.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057774785.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7230502 |
TC |
T |
1bp_deletion | frameshift_variant | 6 | A15,B18,B36,C18,C42,D3 |
Chr7:7230522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B121,B2,B84,C80 |
Chr7:7230544 |
CA |
C |
1bp_deletion | frameshift_variant | 13 | A8,B113,B133,B15,B30,B44,B50,B82,B86,C10,C22,C57,C77 |
Chr7:7230558 |
C |
T |
EMS_canonical_SNV | stop_gained | 119 | A10,A14,A15,A16,A2,A20,A22,A4,A5,A8,A9,B100,B103,B104,B106,B11,B110,B111,B113,B115,B117,B118,B119,B121,B123,B124,B131,B133,B135,B138,B140,B15,B17,B18,B19,B21,B22,B23,B24,B26,B28,B30,B31,B36,B37,B40,B41,B42,B43,B44,B46,B47,B49,B50,B53,B55,B56,B57,B58,B61,B63,B64,B65,B66,B68,B74,B76,B78,B8,B82,B87,B89,B96,B97,C1,C10,C11,C12,C14,C16,C18,C19,C23,C27,C3,C33,C36,C37,C39,C40,C44,C46,C5,C51,C53,C54,C56,C59,C6,C60,C62,C64,C67,C69,C71,C76,C77,C78,C79,C8,C80,C84,C85,C86,C87,D10,D2,D4,D7 |
Chr7:7230579 |
AC |
A |
1bp_deletion | frameshift_variant | 4 | A15,C18,C42,D3 |
Chr7:7230579 |
AC |
A |
1bp_deletion | CDS_variant | 4 | A15,C18,C42,D3 |
Chr7:7230644 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B13,B6,B62,C76,C9,D4 |
Chr7:7230668 |
C |
T |
EMS_canonical_SNV | stop_gained | 13 | A23,B113,B15,B30,B44,B47,B50,C22,C41,C57,C58,C77,C86 |
Chr7:7230727 |
G |
A |
EMS_canonical_SNV | stop_gained | 17 | A23,A8,B113,B133,B15,B30,B44,B47,B59,B72,B86,C22,C41,C57,C84,C86,C87 |
Chr7:7230762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B19,B42,B43,B61,B8 |
Chr7:7230786 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr7:7230787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774785.1PF13966
zf-RVT 21-115 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774785.1 |
Pfam | PF13966 |
zf-RVT | Domain | 21 | 115 | 3e-17 | 63.8 | zinc-binding in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。