当前解析结果
SmilChr07G001015| 统一新 Gene ID | SmilChr07G001015 |
|---|---|
| 名称 | SmilChr07G001015 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7371548 - 7374238 / - |
| NCBI Gene ID | LOC130993770 |
|---|---|
| GeneID | 130993770 |
| locus_tag | - |
| NCBI Name | LOC130993770 |
| 原始查询 | LOC130993770 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=25.6; qcov=0.975; evalue=1.04e-60; confidence=low |
| Rice | Os08g0205150- identity=28.6; qcov=0.848; evalue=4.64e-66; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993770 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057774791.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057774791.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774791.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774791.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774791.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7371580 |
T |
TAC |
2bp_insertion | frameshift_variant | 26 | A14,A20,A3,B10,B102,B109,B111,B17,B3,B36,B64,B7,B79,B91,C11,C18,C28,C48,C49,C5,C61,C64,C69,C77,D8,D9 |
Chr7:7371591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B53,C62 |
Chr7:7371625 |
CCA |
C |
2bp_deletion | frameshift_variant | 19 | A14,A3,B10,B102,B111,B17,B3,B64,B65,C11,C17,C28,C48,C49,C5,C61,C69,D8,D9 |
Chr7:7371632 |
T |
TCC |
2bp_insertion | frameshift_variant | 21 | A14,A3,B102,B109,B111,B136,B16,B17,B25,B3,B64,C11,C17,C28,C48,C49,C5,C61,C69,D8,D9 |
Chr7:7371654 |
A |
AT |
1bp_insertion | frameshift_variant | 20 | A14,A3,B102,B123,B17,B25,B27,B3,B39,B64,B86,B91,C18,C28,C34,C48,C5,C61,C69,D9 |
Chr7:7371659 |
AT |
A |
1bp_deletion | frameshift_variant | 19 | A14,A3,B102,B11,B123,B134,B25,B27,B3,B39,B86,B91,C18,C34,C48,C5,C61,C69,D9 |
Chr7:7371693 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C64 |
Chr7:7371709 |
C |
CCA |
2bp_insertion | frameshift_variant | 2 | B43,C64 |
Chr7:7371709 |
C |
CCA |
2bp_insertion | CDS_variant | 2 | B43,C64 |
Chr7:7371713 |
CAT |
C |
2bp_deletion | frameshift_variant | 1 | C64 |
Chr7:7371713 |
CAT |
C |
2bp_deletion | CDS_variant | 1 | C64 |
Chr7:7371752 |
AC |
A |
1bp_deletion | frameshift_variant | 10 | B10,B16,B17,B77,C37,C45,C63,C64,C66,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774791.1PF00931
NB-ARC 161-319 aa
PF23559
WHD_DRP 403-473 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774791.1 |
Pfam | PF00931 |
NB-ARC | Domain | 161 | 319 | 1.3e-36 | 126.5 | NB-ARC domain |
XP_057774791.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 403 | 473 | 2e-18 | 66.9 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。