当前解析结果
SmilChr07G001257| 统一新 Gene ID | SmilChr07G001257 |
|---|---|
| 名称 | SmilChr07G001257 |
| 描述 | cyclin-dependent kinase G-2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 9690361 - 9691533 / + |
| NCBI Gene ID | LOC130993793 |
|---|---|
| GeneID | 130993793 |
| locus_tag | - |
| NCBI Name | LOC130993793 |
| 原始查询 | LOC130993793 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cyclin-dependent kinase G-2-like |
| 产物 | cyclin-dependent kinase G-2-like |
| Arabidopsis | AT1G67580 (AT1G67580)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843079] identity=40.8; qcov=0.797; evalue=3.53e-67; confidence=medium |
| Rice | Os04g0488000 (CDKG)- identity=42; qcov=0.787; evalue=1.02e-66; confidence=medium |
| GO | GO:0004693 (cyclin-dependent protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006468 (protein phosphorylation); GO:0007346 (regulation of mitotic cell cycle) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993793 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774814.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057774814.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057774814.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774814.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774814.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:9690414 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C84 |
Chr7:9690414 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C84 |
Chr7:9690441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B44,B66,C32,C68 |
Chr7:9690570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B44,B66,C32,C68 |
Chr7:9690624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B78,B82 |
Chr7:9690699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:9691231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr7:9691518 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B65 |
Chr7:9691518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774814.1PF00069
Pkinase 130-387 aa
PF07714
PK_Tyr_Ser-Thr 135-319 aa
PF03109
ABC1 191-275 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774814.1 |
Pfam | PF00069 |
Pkinase | Domain | 130 | 387 | 2e-57 | 195.3 | Protein kinase domain |
XP_057774814.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 135 | 319 | 9.5e-31 | 107.7 | Protein tyrosine and serine/threonine kinase |
XP_057774814.1 |
Pfam | PF03109 |
ABC1 | Domain | 191 | 275 | 2.2e-08 | 34.3 | ABC1 atypical kinase-like domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。