当前解析结果
SmilChr07G001283| 统一新 Gene ID | SmilChr07G001283 |
|---|---|
| 名称 | SmilChr07G001283 |
| 描述 | pentatricopeptide repeat-containing protein At1g12620-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 9858585 - 9859214 / + |
| NCBI Gene ID | LOC130993797 |
|---|---|
| GeneID | 130993797 |
| locus_tag | - |
| NCBI Name | LOC130993797 |
| 原始查询 | LOC130993797 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g12620-like |
| 产物 | pentatricopeptide repeat-containing protein At1g12620-like |
| Arabidopsis | AT1G12620 (AT1G12620)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818] identity=34.4; qcov=0.766; evalue=1.03e-23; confidence=low |
| Rice | Os06g0152500- identity=32.5; qcov=0.722; evalue=1.71e-15; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993797 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057774816.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057774816.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774816.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774816.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774816.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:9858627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr7:9858681 |
TTC |
T |
2bp_deletion | frameshift_variant | 81 | A19,A21,A22,A24,A5,A7,A8,A9,B103,B105,B107,B108,B112,B120,B122,B124,B126,B128,B133,B137,B138,B14,B15,B16,B17,B2,B23,B27,B29,B31,B35,B42,B43,B45,B47,B48,B5,B51,B63,B67,B68,B71,B72,B76,B8,B81,B86,B90,B91,B92,B93,B95,B99,C1,C13,C14,C19,C20,C24,C29,C3,C31,C33,C34,C38,C4,C41,C43,C51,C54,C56,C58,C65,C72,C73,C74,C78,C83,C87,C9,D10 |
Chr7:9858764 |
T |
TCA |
2bp_insertion | frameshift_variant | 7 | A20,B100,C10,C45,C65,C71,C75 |
Chr7:9858766 |
AAT |
A |
2bp_deletion | frameshift_variant | 7 | A20,B100,C10,C45,C65,C71,C75 |
Chr7:9858781 |
TGA |
T |
2bp_deletion | frameshift_variant | 7 | A20,B100,C10,C45,C65,C71,C75 |
Chr7:9858812 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,C10,C75 |
Chr7:9858854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B11,B30 |
Chr7:9858892 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr7:9858894 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr7:9858925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,B96,C82 |
Chr7:9858933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,B96,C82 |
Chr7:9858938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,B96,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774816.1PF13812
PPR_3 53-86 aa
PF01535
PPR 54-68 aa
PF13041
PPR_2 73-121 aa
PF01535
PPR 77-106 aa
PF13812
PPR_3 97-153 aa
PF12854
PPR_1 140-169 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774816.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 53 | 86 | 6.5e-11 | 42.9 | Pentatricopeptide repeat domain |
XP_057774816.1 |
Pfam | PF01535 |
PPR | Repeat | 54 | 68 | 4.7e-06 | 27.2 | PPR repeat |
XP_057774816.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 73 | 121 | 7.8e-18 | 65.0 | PPR repeat family |
XP_057774816.1 |
Pfam | PF01535 |
PPR | Repeat | 77 | 106 | 4.7e-06 | 27.2 | PPR repeat |
XP_057774816.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 97 | 153 | 6.5e-11 | 42.9 | Pentatricopeptide repeat domain |
XP_057774816.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 140 | 169 | 3.8e-09 | 36.8 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。