当前解析结果
SmilChr07G001590| 统一新 Gene ID | SmilChr07G001590 |
|---|---|
| 名称 | SmilChr07G001590 |
| 描述 | uncharacterized SmilChr07G001590 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 13168994 - 13169875 / - |
| NCBI Gene ID | LOC130993832 |
|---|---|
| GeneID | 130993832 |
| locus_tag | - |
| NCBI Name | LOC130993832 |
| 原始查询 | LOC130993832 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814794]; symbol=AT2G02650; hit=AT2G02650; species=arabidopsis; confidence=weak |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814794]; symbol=AT2G02650; hit=AT2G02650; species=arabidopsis; confidence=weak |
| Arabidopsis | AT2G02650 (AT2G02650)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814794] identity=24; qcov=1.1; evalue=4.67e-20; confidence=weak |
| Rice | Os01g0930300- identity=23.1; qcov=0.962; evalue=3.61e-11; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993832 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057774852.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057774852.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057774852.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774852.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774852.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:13169012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B47,D4 |
Chr7:13169033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B139,B23,B47,C82,D4 |
Chr7:13169055 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr7:13169132 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:13169195 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr7:13169210 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:13169270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B140,C30 |
Chr7:13169363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C35 |
Chr7:13169364 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:13169367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr7:13169388 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B123,B24 |
Chr7:13169395 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B63,B83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774852.1PF13966
zf-RVT 1-50 aa
PF13456
RVT_3 161-270 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774852.1 |
Pfam | PF13966 |
zf-RVT | Domain | 1 | 50 | 1.3e-10 | 42.4 | zinc-binding in reverse transcriptase |
XP_057774852.1 |
Pfam | PF13456 |
RVT_3 | Domain | 161 | 270 | 8.4e-18 | 65.2 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。