当前解析结果
SmilChr07G001663| 统一新 Gene ID | SmilChr07G001663 |
|---|---|
| 名称 | SmilChr07G001663 |
| 描述 | uncharacterized SmilChr07G001663 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 14089932 - 14090969 / + |
| NCBI Gene ID | LOC130993851 |
|---|---|
| GeneID | 130993851 |
| locus_tag | - |
| NCBI Name | LOC130993851 |
| 原始查询 | LOC130993851 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium |
| 产物 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G19260 (AT1G19260)TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=40.1; qcov=0.861; evalue=2.03e-67; confidence=medium |
| Rice | Os05g0311600- identity=54; qcov=0.328; evalue=1.16e-40; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF14291 (DUF4371) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993851 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774871.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057774871.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057774871.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057774871.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774871.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:14089992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C16,C48 |
Chr7:14089993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr7:14090052 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,B75,B96,C59,C80 |
Chr7:14090158 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr7:14090216 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B50,C6 |
Chr7:14090299 |
T |
TG |
1bp_insertion | frameshift_variant | 7 | A24,B105,B29,B45,B51,C10,C51 |
Chr7:14090427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr7:14090466 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B46,C32,C68,C8 |
Chr7:14090518 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B93,C70 |
Chr7:14090669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr7:14090690 |
AT |
A |
1bp_deletion | frameshift_variant | 17 | B1,B111,B119,B122,B133,B16,B19,B70,B86,B95,B97,C29,C38,C52,C54,C55,C86 |
Chr7:14090733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C33,C46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774871.1PF14291
DUF4371 151-345 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774871.1 |
Pfam | PF14291 |
DUF4371 | Domain | 151 | 345 | 6.9e-62 | 209.8 | ZMYM1/FAM200, RNase-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。