当前解析结果
SmilChr01G003588| 统一新 Gene ID | SmilChr01G003588 |
|---|---|
| 名称 | SmilChr01G003588 |
| 描述 | glutathione hydrolase 1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 54430914 - 54433917 / + |
| NCBI Gene ID | LOC130993886 |
|---|---|
| GeneID | 130993886 |
| locus_tag | - |
| NCBI Name | LOC130993886 |
| 原始查询 | LOC130993886 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutathione hydrolase 1-like |
| 产物 | glutathione hydrolase 1-like |
| Arabidopsis | AT4G39640 (GGT1)gamma-glutamyl transpeptidase 1 [Source:NCBI gene (formerly Entrezgene);Acc:830118] identity=60.2; qcov=1.02; evalue=0; confidence=high |
| Rice | Os04g0457500- identity=62.3; qcov=0.98; evalue=0; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0006751 (glutathione catabolic process); GO:0036374 (glutathione gamma-glutamate hydrolase) |
| KEGG | smil00430 (Taurine and hypotaurine metabolism - Salvia miltiorrhiza (redroot sage)); smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil00590 (Arachidonic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01019 (G_glu_transpept) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993886 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057774905.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057774905.1 |
| 3 | Lysosome | 溶酶体 | 0.20000 | XP_057774905.1 |
| 4 | Vesicle | 囊泡 | 0.20000 | XP_057774905.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057774905.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:54431365 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,C75 |
Chr1:54431369 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,B55 |
Chr1:54431526 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B25,B73,C33,C41,D7 |
Chr1:54432058 |
GAT |
G |
2bp_deletion | frameshift_variant | 2 | B38,D6 |
Chr1:54432058 |
GAT |
G |
2bp_deletion | CDS_variant | 2 | B38,D6 |
Chr1:54432110 |
GC |
G |
1bp_deletion | frameshift_variant | 5 | A2,B107,B121,C21,C65 |
Chr1:54432110 |
GC |
G |
1bp_deletion | CDS_variant | 5 | A2,B107,B121,C21,C65 |
Chr1:54432188 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B17,B40,C45 |
Chr1:54432300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,D8 |
Chr1:54433618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,D5 |
Chr1:54433630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B62,B96 |
Chr1:54433663 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C81,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774905.1PF01019
G_glu_transpept 45-553 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774905.1 |
Pfam | PF01019 |
G_glu_transpept | Domain | 45 | 553 | 1e-169 | 566.5 | Gamma-glutamyltranspeptidase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。