当前解析结果
SmilChr07G002029| 统一新 Gene ID | SmilChr07G002029 |
|---|---|
| 名称 | SmilChr07G002029 |
| 描述 | uncharacterized SmilChr07G002029 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 18318481 - 18319237 / + |
| NCBI Gene ID | LOC130993923 |
|---|---|
| GeneID | 130993923 |
| locus_tag | - |
| NCBI Name | LOC130993923 |
| 原始查询 | LOC130993923 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=27.1; qcov=0.865; evalue=2.72e-14; confidence=low |
| Rice | Os02g0118800- identity=27.7; qcov=0.878; evalue=9.5e-14; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993923 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057774943.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057774943.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774943.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774943.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774943.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:18318485 |
GAA |
G |
2bp_deletion | frameshift_variant | 84 | A11,A15,A21,A23,A4,A6,B1,B101,B103,B106,B107,B108,B11,B111,B113,B115,B118,B123,B124,B126,B131,B133,B14,B15,B16,B17,B20,B22,B24,B28,B33,B36,B38,B40,B43,B45,B47,B5,B50,B51,B52,B54,B55,B57,B59,B61,B62,B63,B65,B7,B73,B77,B83,B89,B90,B91,B95,B97,C10,C15,C18,C19,C26,C4,C41,C45,C48,C50,C51,C55,C58,C63,C7,C72,C74,C76,C78,C82,C87,C9,D1,D10,D3,D7 |
Chr7:18318499 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,B120 |
Chr7:18318612 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | A7,B23,B88,B89,B99,C11,C69,D8 |
Chr7:18318638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr7:18318648 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,C69 |
Chr7:18318658 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr7:18318683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr7:18318694 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B129,C64,C66,C9 |
Chr7:18318749 |
CAT |
C |
2bp_deletion | frameshift_variant | 97 | A1,A10,A11,A15,A23,A4,A6,B1,B101,B103,B106,B107,B108,B11,B111,B113,B118,B120,B123,B124,B126,B131,B133,B135,B14,B15,B16,B17,B20,B22,B23,B24,B28,B3,B33,B36,B38,B39,B40,B41,B43,B45,B47,B48,B49,B5,B51,B54,B57,B59,B61,B62,B63,B7,B73,B77,B79,B83,B85,B88,B89,B90,B91,B92,B95,B97,B99,C10,C15,C18,C19,C22,C26,C4,C41,C45,C48,C50,C51,C52,C54,C56,C58,C63,C7,C72,C74,C76,C78,C79,C82,C84,C87,D1,D10,D3,D7 |
Chr7:18318766 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,D11 |
Chr7:18318789 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr7:18318858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774943.1PF13966
zf-RVT 25-119 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774943.1 |
Pfam | PF13966 |
zf-RVT | Domain | 25 | 119 | 7.8e-19 | 68.8 | zinc-binding in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。