当前解析结果
SmilChr07G002061| 统一新 Gene ID | SmilChr07G002061 |
|---|---|
| 名称 | SmilChr07G002061 |
| 描述 | probable disease resistance protein RF9 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 18748648 - 18749553 / + |
| NCBI Gene ID | LOC130993928 |
|---|---|
| GeneID | 130993928 |
| locus_tag | - |
| NCBI Name | LOC130993928 |
| 原始查询 | LOC130993928 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein RF9 |
| 产物 | probable disease resistance protein RF9 |
| Arabidopsis | AT1G59218 (AT1G59218)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842234] identity=34.6; qcov=0.787; evalue=1.27e-27; confidence=low |
| Rice | Os10g0162846- identity=25.9; qcov=0.884; evalue=7.78e-14; confidence=low |
| GO | GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding) |
| KEGG | - |
| Pfam | PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993928 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774948.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057774948.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057774948.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057774948.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057774948.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:18748649 |
TGG |
T |
2bp_deletion | frameshift_variant | 3 | B137,B81,C15 |
Chr7:18748649 |
TGG |
T |
2bp_deletion | CDS_variant | 3 | B137,B81,C15 |
Chr7:18748654 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B81,C15 |
Chr7:18748654 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B81,C15 |
Chr7:18748655 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | B81,C15 |
Chr7:18748655 |
C |
CT |
1bp_insertion | CDS_variant | 2 | B81,C15 |
Chr7:18748670 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,B87,C82 |
Chr7:18748675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B81,C15,C6 |
Chr7:18748676 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,B87,C82 |
Chr7:18748684 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,B87,C82 |
Chr7:18748701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B81,C27,C6,C61 |
Chr7:18748707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B81,C27,C6,C61,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774948.1PF23598
LRR_14 2-232 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774948.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 2 | 232 | 1.4e-11 | 44.4 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。