当前解析结果
SmilChr07G002280| 统一新 Gene ID | SmilChr07G002280 |
|---|---|
| 名称 | SmilChr07G002280 |
| 描述 | uncharacterized SmilChr07G002280 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 21080573 - 21084723 / + |
| NCBI Gene ID | LOC130993950 |
|---|---|
| GeneID | 130993950 |
| locus_tag | - |
| NCBI Name | LOC130993950 |
| 原始查询 | LOC130993950 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821398]; symbol=AT3G18670; hit=AT3G18670; species=arabidopsis; confidence=low |
| 产物 | Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821398]; symbol=AT3G18670; hit=AT3G18670; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G18670 (AT3G18670)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821398] identity=26.9; qcov=0.397; evalue=8.06e-11; confidence=low |
| Rice | Os11g0251400- identity=34.6; qcov=0.277; evalue=1.36e-07; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF12796 (Ank_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993950 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057774972.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057774972.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774972.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774972.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774972.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:21080941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr7:21080948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B130,B18,D9 |
Chr7:21081116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:21081152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:21081448 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | D10 |
Chr7:21081448 |
T |
TG |
1bp_insertion | CDS_variant | 1 | D10 |
Chr7:21081453 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | D10 |
Chr7:21081453 |
TC |
T |
1bp_deletion | CDS_variant | 1 | D10 |
Chr7:21084644 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B122 |
Chr7:21084678 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr7:21084694 |
GA |
G |
1bp_deletion | frameshift_variant | 15 | A15,A16,B136,B41,B53,B61,B77,B78,B8,B82,B90,C29,C48,C83,D10 |
Chr7:21084706 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B121,B25,B26,C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774972.1PF12796
Ank_2 93-152 aa
PF12796
Ank_2 126-190 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774972.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 93 | 152 | 5.7e-21 | 75.6 | Ankyrin repeats (3 copies) |
XP_057774972.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 126 | 190 | 5.7e-21 | 75.6 | Ankyrin repeats (3 copies) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。