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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G003587

染色体: Chr01 坐标: 54427100-54458869 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G003587
名称SmilChr01G003587
描述pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向54427100 - 54458869 / +

ID 对照

NCBI Gene IDLOC130993984
GeneID130993984
locus_tag-
NCBI NameLOC130993984
原始查询LOC130993984

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like
产物pentatricopeptide repeat-containing protein At4g39620%2C chloroplastic-like
ArabidopsisAT4G39620 (EMB2453)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830116]
identity=71.1; qcov=0.861; evalue=0; confidence=high
RiceOs02g0750400
-
identity=63; qcov=0.386; evalue=1.41e-77; confidence=low
GOGO:0003729 (mRNA binding); GO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130993984

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057775008.1
2 Chloroplast stroma 叶绿体基质 0.20000 XP_057775008.1
3 Nucleus 细胞核 0.00000 XP_057775008.1
4 Chromosome 染色体 0.00000 XP_057775008.1
5 Centromere 着丝粒 0.00000 XP_057775008.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:54428286 C T EMS_canonical_SNV CDS_variant 1 C62
Chr1:54429064 C T EMS_canonical_SNV CDS_variant 2 B86,C44
Chr1:54429097 C T EMS_canonical_SNV CDS_variant 1 B10
Chr1:54429239 C T EMS_canonical_SNV CDS_variant 5 B130,B79,C1,C16,C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775008.1
490 aa
N
1
245
490
TPR_24
PPR
PPR_2
PPR_3
PPR_3
PPR_2
PPR_3
PPR
PPR_3
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR
PPR_3
PPR
PPR
C
PF23276 TPR_24 119-234 aa PF01535 PPR 136-165 aa PF13041 PPR_2 136-179 aa PF13812 PPR_3 137-178 aa PF13812 PPR_3 156-219 aa PF13041 PPR_2 171-220 aa PF13812 PPR_3 206-256 aa PF01535 PPR 210-236 aa PF13812 PPR_3 231-291 aa PF13041 PPR_2 243-289 aa PF01535 PPR 245-275 aa PF13041 PPR_2 277-322 aa PF01535 PPR 280-308 aa PF13812 PPR_3 311-360 aa PF01535 PPR 316-344 aa PF13812 PPR_3 336-397 aa PF01535 PPR 350-379 aa PF01535 PPR 386-409 aa
XP_057775014.1
490 aa
N
1
245
490
TPR_24
PPR
PPR_2
PPR_3
PPR_3
PPR_2
PPR_3
PPR
PPR_3
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR
PPR_3
PPR
PPR
C
PF23276 TPR_24 119-234 aa PF01535 PPR 136-165 aa PF13041 PPR_2 136-179 aa PF13812 PPR_3 137-178 aa PF13812 PPR_3 156-219 aa PF13041 PPR_2 171-220 aa PF13812 PPR_3 206-256 aa PF01535 PPR 210-236 aa PF13812 PPR_3 231-291 aa PF13041 PPR_2 243-289 aa PF01535 PPR 245-275 aa PF13041 PPR_2 277-322 aa PF01535 PPR 280-308 aa PF13812 PPR_3 311-360 aa PF01535 PPR 316-344 aa PF13812 PPR_3 336-397 aa PF01535 PPR 350-379 aa PF01535 PPR 386-409 aa
XP_057775021.1
490 aa
N
1
245
490
TPR_24
PPR
PPR_2
PPR_3
PPR_3
PPR_2
PPR_3
PPR
PPR_3
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR
PPR_3
PPR
PPR
C
PF23276 TPR_24 119-234 aa PF01535 PPR 136-165 aa PF13041 PPR_2 136-179 aa PF13812 PPR_3 137-178 aa PF13812 PPR_3 156-219 aa PF13041 PPR_2 171-220 aa PF13812 PPR_3 206-256 aa PF01535 PPR 210-236 aa PF13812 PPR_3 231-291 aa PF13041 PPR_2 243-289 aa PF01535 PPR 245-275 aa PF13041 PPR_2 277-322 aa PF01535 PPR 280-308 aa PF13812 PPR_3 311-360 aa PF01535 PPR 316-344 aa PF13812 PPR_3 336-397 aa PF01535 PPR 350-379 aa PF01535 PPR 386-409 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057775008.1 Pfam PF23276 TPR_24 Repeat 119 234 1.2e-13 51.8 Pentatricopeptide repeat-containing protein
XP_057775008.1 Pfam PF01535 PPR Repeat 136 165 1.6e-41 138.3 PPR repeat
XP_057775008.1 Pfam PF13041 PPR_2 Repeat 136 179 2.9e-47 159.3 PPR repeat family
XP_057775008.1 Pfam PF13812 PPR_3 Repeat 137 178 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775008.1 Pfam PF13812 PPR_3 Repeat 156 219 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775008.1 Pfam PF13041 PPR_2 Repeat 171 220 2.9e-47 159.3 PPR repeat family
XP_057775008.1 Pfam PF13812 PPR_3 Repeat 206 256 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775008.1 Pfam PF01535 PPR Repeat 210 236 1.6e-41 138.3 PPR repeat
XP_057775008.1 Pfam PF13812 PPR_3 Repeat 231 291 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775008.1 Pfam PF13041 PPR_2 Repeat 243 289 2.9e-47 159.3 PPR repeat family
XP_057775008.1 Pfam PF01535 PPR Repeat 245 275 1.6e-41 138.3 PPR repeat
XP_057775008.1 Pfam PF13041 PPR_2 Repeat 277 322 2.9e-47 159.3 PPR repeat family
XP_057775008.1 Pfam PF01535 PPR Repeat 280 308 1.6e-41 138.3 PPR repeat
XP_057775008.1 Pfam PF13812 PPR_3 Repeat 311 360 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775008.1 Pfam PF01535 PPR Repeat 316 344 1.6e-41 138.3 PPR repeat
XP_057775008.1 Pfam PF13812 PPR_3 Repeat 336 397 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775008.1 Pfam PF01535 PPR Repeat 350 379 1.6e-41 138.3 PPR repeat
XP_057775008.1 Pfam PF01535 PPR Repeat 386 409 1.6e-41 138.3 PPR repeat
XP_057775014.1 Pfam PF23276 TPR_24 Repeat 119 234 1.2e-13 51.8 Pentatricopeptide repeat-containing protein
XP_057775014.1 Pfam PF01535 PPR Repeat 136 165 1.6e-41 138.3 PPR repeat
XP_057775014.1 Pfam PF13041 PPR_2 Repeat 136 179 2.9e-47 159.3 PPR repeat family
XP_057775014.1 Pfam PF13812 PPR_3 Repeat 137 178 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775014.1 Pfam PF13812 PPR_3 Repeat 156 219 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775014.1 Pfam PF13041 PPR_2 Repeat 171 220 2.9e-47 159.3 PPR repeat family
XP_057775014.1 Pfam PF13812 PPR_3 Repeat 206 256 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775014.1 Pfam PF01535 PPR Repeat 210 236 1.6e-41 138.3 PPR repeat
XP_057775014.1 Pfam PF13812 PPR_3 Repeat 231 291 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775014.1 Pfam PF13041 PPR_2 Repeat 243 289 2.9e-47 159.3 PPR repeat family
XP_057775014.1 Pfam PF01535 PPR Repeat 245 275 1.6e-41 138.3 PPR repeat
XP_057775014.1 Pfam PF13041 PPR_2 Repeat 277 322 2.9e-47 159.3 PPR repeat family
XP_057775014.1 Pfam PF01535 PPR Repeat 280 308 1.6e-41 138.3 PPR repeat
XP_057775014.1 Pfam PF13812 PPR_3 Repeat 311 360 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775014.1 Pfam PF01535 PPR Repeat 316 344 1.6e-41 138.3 PPR repeat
XP_057775014.1 Pfam PF13812 PPR_3 Repeat 336 397 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775014.1 Pfam PF01535 PPR Repeat 350 379 1.6e-41 138.3 PPR repeat
XP_057775014.1 Pfam PF01535 PPR Repeat 386 409 1.6e-41 138.3 PPR repeat
XP_057775021.1 Pfam PF23276 TPR_24 Repeat 119 234 1.2e-13 51.8 Pentatricopeptide repeat-containing protein
XP_057775021.1 Pfam PF01535 PPR Repeat 136 165 1.6e-41 138.3 PPR repeat
XP_057775021.1 Pfam PF13041 PPR_2 Repeat 136 179 2.9e-47 159.3 PPR repeat family
XP_057775021.1 Pfam PF13812 PPR_3 Repeat 137 178 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775021.1 Pfam PF13812 PPR_3 Repeat 156 219 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775021.1 Pfam PF13041 PPR_2 Repeat 171 220 2.9e-47 159.3 PPR repeat family
XP_057775021.1 Pfam PF13812 PPR_3 Repeat 206 256 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775021.1 Pfam PF01535 PPR Repeat 210 236 1.6e-41 138.3 PPR repeat
XP_057775021.1 Pfam PF13812 PPR_3 Repeat 231 291 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775021.1 Pfam PF13041 PPR_2 Repeat 243 289 2.9e-47 159.3 PPR repeat family
XP_057775021.1 Pfam PF01535 PPR Repeat 245 275 1.6e-41 138.3 PPR repeat
XP_057775021.1 Pfam PF13041 PPR_2 Repeat 277 322 2.9e-47 159.3 PPR repeat family
XP_057775021.1 Pfam PF01535 PPR Repeat 280 308 1.6e-41 138.3 PPR repeat
XP_057775021.1 Pfam PF13812 PPR_3 Repeat 311 360 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775021.1 Pfam PF01535 PPR Repeat 316 344 1.6e-41 138.3 PPR repeat
XP_057775021.1 Pfam PF13812 PPR_3 Repeat 336 397 4.6e-36 123.4 Pentatricopeptide repeat domain
XP_057775021.1 Pfam PF01535 PPR Repeat 350 379 1.6e-41 138.3 PPR repeat
XP_057775021.1 Pfam PF01535 PPR Repeat 386 409 1.6e-41 138.3 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057919031.1
CAAAACCAAAACAAAACAAAACAAAAAAAAAAAAAAAGGAAAAAAGAAAGAAAAGAAGAAGAAGAAGCAGGCATTTTCACTTTTTCAGTTATTGAGTAAATCTTCACTTCCCTAACAGAAAATCTGGATAAAAGAGTCTACGGCGGAGCAACCAGCCGAGGCCTACCAAGTCCAGTATGACGACGACCCCTCCTCTCCCCTTCGCGTCCGCCTCTCTGCAACTCACCTCCGTGCCAAAACCCAGCTACATCCAATCTTCA...
XM_057919038.1
AAAACAAAAAAAAAAAAAAAGGAAAAAAGAAAGAAAAGAAGAAGAAGAAGCAGGCATTTTCACTTTTTCAGTTATTGAGTAAATCTTCACTTCCCTAACAGAAAATCTGGATAAAAGAGTCTACGGCGGAGCAACCAGCCGAGGCCTACCAAGTCCAGTATGACGACGACCCCTCCTCTCCCCTTCGCGTCCGCCTCTCTGCAACTCACCTCCGTGCCAAAACCCAGCTACATCCAATCTTCAACCCATCGCCCATACCC...

CDS

3 records

下载 CDS FASTA
LOC130993984
ATGACGACGACCCCTCCTCTCCCCTTCGCGTCCGCCTCTCTGCAACTCACCTCCGTGCCAAAACCCAGCTACATCCAATCTTCAACCCATCGCCCATACCCAATTTCAAGAATCCGAATGTGCGGGATTTCGGCCTCACCCGGAAAGAAAACGGGTCCCAGGAAGACCCGCAAGAAAATCAGCTCCTCTCCAACTTCAGAAGCTGAAGACTTGGTTCGATCAATCGTGAGGAATATATCGGATAAGGAGCCGTTGCTGAG...
LOC130993984
ATGACGACGACCCCTCCTCTCCCCTTCGCGTCCGCCTCTCTGCAACTCACCTCCGTGCCAAAACCCAGCTACATCCAATCTTCAACCCATCGCCCATACCCAATTTCAAGAATCCGAATGTGCGGGATTTCGGCCTCACCCGGAAAGAAAACGGGTCCCAGGAAGACCCGCAAGAAAATCAGCTCCTCTCCAACTTCAGAAGCTGAAGACTTGGTTCGATCAATCGTGAGGAATATATCGGATAAGGAGCCGTTGCTGAG...

Protein

3 records

下载 Protein FASTA
XP_057775008.1
MTTTPPLPFASASLQLTSVPKPSYIQSSTHRPYPISRIRMCGISASPGKKTGPRKTRKKISSSPTSEAEDLVRSIVRNISDKEPLLSTLNKYVQFVRTDHCFLLFEELGKSERWLQCLEVFRWMQKQRWYIADNGVYSKLISVMGKKGQSRMAMWLFSEMRNSGCKPDTSVYNALITAHLHSRDKAKALAKAVSYFEKMKGMERCQPSIVTYNILLRAFAQAKNVDQVNALFKDLDESIVSADTFTFNGVMDAYGKLGMI...
XP_057775014.1
MTTTPPLPFASASLQLTSVPKPSYIQSSTHRPYPISRIRMCGISASPGKKTGPRKTRKKISSSPTSEAEDLVRSIVRNISDKEPLLSTLNKYVQFVRTDHCFLLFEELGKSERWLQCLEVFRWMQKQRWYIADNGVYSKLISVMGKKGQSRMAMWLFSEMRNSGCKPDTSVYNALITAHLHSRDKAKALAKAVSYFEKMKGMERCQPSIVTYNILLRAFAQAKNVDQVNALFKDLDESIVSADTFTFNGVMDAYGKLGMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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