当前解析结果
SmilChr07G002603| 统一新 Gene ID | SmilChr07G002603 |
|---|---|
| 名称 | SmilChr07G002603 |
| 描述 | WAT1-related protein At1g70260-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 25026485 - 25030122 / + |
| NCBI Gene ID | LOC130994007 |
|---|---|
| GeneID | 130994007 |
| locus_tag | - |
| NCBI Name | LOC130994007 |
| 原始查询 | LOC130994007 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | WAT1-related protein At1g70260-like |
| 产物 | WAT1-related protein At1g70260-like |
| Arabidopsis | AT1G70260 (UMAMIT36)nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:843362] identity=46.6; qcov=1.08; evalue=1.11e-113; confidence=high |
| Rice | Os08g0561500 (OsUMAMIT12)- identity=30; qcov=0.944; evalue=2.15e-49; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF00892 (EamA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994007 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057775025.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057775025.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057775025.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775025.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775025.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:25026885 |
CT |
C |
1bp_deletion | frameshift_variant | 66 | A14,A18,A5,A7,A8,A9,B102,B103,B111,B113,B120,B121,B124,B127,B133,B134,B22,B25,B3,B30,B34,B40,B44,B45,B48,B49,B50,B55,B60,B64,B76,B77,B79,B84,B88,B89,B90,B91,B92,B93,B97,C1,C14,C16,C19,C21,C25,C27,C31,C36,C37,C38,C43,C44,C45,C50,C51,C6,C60,C71,C83,C87,D1,D11,D4,D8 |
Chr7:25029085 |
CA |
* |
1bp_deletion | CDS_variant | 4 | B132,B5,B62,C79 |
Chr7:25029089 |
G |
GC |
1bp_insertion | frameshift_variant | 4 | B132,B5,B62,C79 |
Chr7:25029089 |
G |
GC |
1bp_insertion | CDS_variant | 4 | B132,B5,B62,C79 |
Chr7:25029092 |
CCT |
C |
2bp_deletion | frameshift_variant | 4 | B132,B5,B62,C79 |
Chr7:25029092 |
CCT |
C |
2bp_deletion | CDS_variant | 4 | B132,B5,B62,C79 |
Chr7:25029165 |
GCT |
G |
2bp_deletion | frameshift_variant | 3 | A4,C57,C85 |
Chr7:25029165 |
GCT |
G |
2bp_deletion | CDS_variant | 3 | A4,C57,C85 |
Chr7:25029170 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | A4,C57,C85 |
Chr7:25029170 |
AT |
A |
1bp_deletion | CDS_variant | 3 | A4,C57,C85 |
Chr7:25029172 |
TC |
T |
1bp_deletion | frameshift_variant | 66 | A14,A18,A5,A7,A8,A9,B102,B103,B111,B113,B120,B121,B124,B127,B132,B133,B134,B22,B3,B30,B34,B40,B44,B45,B48,B49,B5,B50,B55,B60,B62,B64,B76,B77,B79,B84,B88,B89,B90,B91,B92,B93,B97,C1,C14,C16,C19,C21,C25,C26,C27,C31,C38,C43,C44,C45,C50,C51,C6,C60,C71,C79,C83,C87,D1,D8 |
Chr7:25029203 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B112 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775025.1PF00892
EamA 13-145 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775025.1 |
Pfam | PF00892 |
EamA | Domain | 13 | 145 | 5.5e-09 | 37.1 | EamA-like transporter family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。