当前解析结果
SmilChr07G002709| 统一新 Gene ID | SmilChr07G002709 |
|---|---|
| 名称 | SmilChr07G002709 |
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 26508073 - 26511006 / + |
| NCBI Gene ID | LOC130994019 |
|---|---|
| GeneID | 130994019 |
| locus_tag | - |
| NCBI Name | LOC130994019 |
| 原始查询 | LOC130994019 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| 产物 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| Arabidopsis | AT3G42170 (DAYSLEEPER)BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=30; qcov=0.838; evalue=2.67e-101; confidence=low |
| Rice | Os02g0521366- identity=34.1; qcov=0.847; evalue=6.73e-114; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical); PF27041 (ZBED1_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994019 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775039.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057775039.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057775039.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057775039.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057775039.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:26508078 |
CA |
C |
1bp_deletion | frameshift_variant | 5 | B110,C15,C16,C62,D3 |
Chr7:26508078 |
CA |
C |
1bp_deletion | CDS_variant | 5 | B110,C15,C16,C62,D3 |
Chr7:26508134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr7:26508154 |
C |
T |
EMS_canonical_SNV | stop_gained | 31 | A14,A20,A6,A8,B103,B111,B12,B125,B136,B137,B139,B140,B18,B20,B23,B3,B61,B72,B88,C18,C31,C35,C4,C42,C63,C65,C67,C87,D10,D5,D6 |
Chr7:26508158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,B139 |
Chr7:26508179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,C85 |
Chr7:26508180 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr7:26508186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B33,C85 |
Chr7:26508187 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,C48 |
Chr7:26508198 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,D7 |
Chr7:26508206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr7:26508241 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A15,B103,B127,B20,B54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775039.1PF27041
ZBED1_RNase-like 269-365 aa
PF27039
ZBED1_RNase-like_helical 368-480 aa
PF14372
hAT-like_RNase-H 500-591 aa
PF05699
Dimer_Tnp_hAT 644-725 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775039.1 |
Pfam | PF27041 |
ZBED1_RNase-like | Domain | 269 | 365 | 8.8e-33 | 113.1 | ZBED1 RNase-like domain |
XP_057775039.1 |
Pfam | PF27039 |
ZBED1_RNase-like_helical | Domain | 368 | 480 | 4.9e-35 | 120.7 | ZBED1 RNase-like helical domain |
XP_057775039.1 |
Pfam | PF14372 |
hAT-like_RNase-H | Domain | 500 | 591 | 5.1e-23 | 81.8 | hAT-like transposase, RNase-H fold |
XP_057775039.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 644 | 725 | 2e-29 | 101.9 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。