当前解析结果
SmilChr01G003598| 统一新 Gene ID | SmilChr01G003598 |
|---|---|
| 名称 | SmilChr01G003598 |
| 描述 | uncharacterized methyltransferase At1g78140, chloroplastic-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 54539759 - 54543576 / - |
| NCBI Gene ID | LOC130994083 |
|---|---|
| GeneID | 130994083 |
| locus_tag | - |
| NCBI Name | LOC130994083 |
| 原始查询 | LOC130994083 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844150]; symbol=AT1G78140; hit=AT1G78140; species=arabidopsis; confidence=high |
| 产物 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844150]; symbol=AT1G78140; hit=AT1G78140; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G78140 (AT1G78140)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844150] identity=66.1; qcov=0.78; evalue=5.61e-140; confidence=high |
| Rice | Os06g0646000- identity=56.7; qcov=0.777; evalue=2.91e-111; confidence=high |
| GO | GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity) |
| KEGG | - |
| Pfam | PF01209 (Ubie_methyltran); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994083 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057775101.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057775101.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057775106.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775101.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775101.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:54540193 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:54540340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B128,B132,B15 |
Chr1:54540873 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr1:54540904 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,B132,B15 |
Chr1:54540905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr1:54541009 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr1:54541009 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775101.1PF13489
Methyltransf_23 184-350 aa
PF01209
Ubie_methyltran 186-303 aa
PF13847
Methyltransf_31 193-307 aa
PF13649
Methyltransf_25 195-299 aa
PF08241
Methyltransf_11 196-302 aa
PF08242
Methyltransf_12 197-301 aa
XP_057775106.1PF13489
Methyltransf_23 184-344 aa
PF01209
Ubie_methyltran 186-297 aa
PF13847
Methyltransf_31 193-301 aa
PF13649
Methyltransf_25 195-293 aa
PF08241
Methyltransf_11 196-296 aa
PF08242
Methyltransf_12 197-295 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775101.1 |
Pfam | PF13489 |
Methyltransf_23 | Domain | 184 | 350 | 5.5e-09 | 36.7 | Methyltransferase domain |
XP_057775101.1 |
Pfam | PF01209 |
Ubie_methyltran | Family | 186 | 303 | 9.7e-08 | 32.4 | ubiE/COQ5 methyltransferase family |
XP_057775101.1 |
Pfam | PF13847 |
Methyltransf_31 | Domain | 193 | 307 | 2.7e-11 | 44.1 | Methyltransferase domain |
XP_057775101.1 |
Pfam | PF13649 |
Methyltransf_25 | Domain | 195 | 299 | 9e-16 | 59.1 | Methyltransferase domain |
XP_057775101.1 |
Pfam | PF08241 |
Methyltransf_11 | Domain | 196 | 302 | 8.6e-21 | 75.1 | Methyltransferase domain |
XP_057775101.1 |
Pfam | PF08242 |
Methyltransf_12 | Domain | 197 | 301 | 1.3e-10 | 42.6 | Methyltransferase domain |
XP_057775106.1 |
Pfam | PF13489 |
Methyltransf_23 | Domain | 184 | 344 | 4.3e-09 | 37.0 | Methyltransferase domain |
XP_057775106.1 |
Pfam | PF01209 |
Ubie_methyltran | Family | 186 | 297 | 4.7e-09 | 36.7 | ubiE/COQ5 methyltransferase family |
XP_057775106.1 |
Pfam | PF13847 |
Methyltransf_31 | Domain | 193 | 301 | 4.4e-12 | 46.7 | Methyltransferase domain |
XP_057775106.1 |
Pfam | PF13649 |
Methyltransf_25 | Domain | 195 | 293 | 1.9e-17 | 64.4 | Methyltransferase domain |
XP_057775106.1 |
Pfam | PF08241 |
Methyltransf_11 | Domain | 196 | 296 | 1e-21 | 78.0 | Methyltransferase domain |
XP_057775106.1 |
Pfam | PF08242 |
Methyltransf_12 | Domain | 197 | 295 | 1.6e-11 | 45.5 | Methyltransferase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。