当前解析结果
SmilChr07G003053| 统一新 Gene ID | SmilChr07G003053 |
|---|---|
| 名称 | SmilChr07G003053 |
| 描述 | uncharacterized SmilChr07G003053 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 31857617 - 31862524 / + |
| NCBI Gene ID | LOC130994096 |
|---|---|
| GeneID | 130994096 |
| locus_tag | - |
| NCBI Name | LOC130994096 |
| 原始查询 | LOC130994096 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=25.3; qcov=0.092; evalue=4.78e-10; confidence=weak |
| Rice | Os08g0202300- identity=31.1; qcov=0.232; evalue=3.84e-58; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994096 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775114.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057775114.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057775114.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775114.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775114.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:31857627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,B19,B54 |
Chr7:31857830 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C46 |
Chr7:31857830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr7:31857869 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr7:31857881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr7:31857906 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:31857936 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B12,B135,B88 |
Chr7:31857950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:31857952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr7:31857960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:31857969 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr7:31857977 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,B12 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775114.1PF00078
RVT_1 694-853 aa
PF17919
RT_RNaseH_2 916-1014 aa
PF17917
RT_RNaseH 944-1043 aa
PF13456
RVT_3 1079-1197 aa
PF17921
Integrase_H2C2 1286-1337 aa
PF00665
rve 1354-1450 aa
PF31073
DUF8803 1573-1634 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775114.1 |
Pfam | PF00078 |
RVT_1 | Domain | 694 | 853 | 1.6e-32 | 113.7 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057775114.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 916 | 1014 | 1.9e-18 | 67.1 | RNase H-like domain found in reverse transcriptase |
XP_057775114.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 944 | 1043 | 2.5e-14 | 54.0 | RNase H-like domain found in reverse transcriptase |
XP_057775114.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1079 | 1197 | 2.8e-15 | 57.0 | Reverse transcriptase-like |
XP_057775114.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1286 | 1337 | 1e-11 | 45.5 | Integrase zinc binding domain |
XP_057775114.1 |
Pfam | PF00665 |
rve | Domain | 1354 | 1450 | 2.1e-17 | 63.9 | Integrase core domain |
XP_057775114.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1573 | 1634 | 3.5e-25 | 88.3 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。