当前解析结果
SmilChr07G003085| 统一新 Gene ID | SmilChr07G003085 |
|---|---|
| 名称 | SmilChr07G003085 |
| 描述 | uncharacterized SmilChr07G003085 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 32534172 - 32535611 / + |
| NCBI Gene ID | LOC130994104 |
|---|---|
| GeneID | 130994104 |
| locus_tag | - |
| NCBI Name | LOC130994104 |
| 原始查询 | LOC130994104 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0292200; species=rice; confidence=weak |
| 产物 | hit=Os12g0292200; species=rice; confidence=weak |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=38.9; qcov=0.159; evalue=1.06e-09; confidence=weak |
| Rice | Os12g0292200- identity=43.2; qcov=0.194; evalue=1.44e-16; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994104 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057775122.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057775122.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057775122.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057775122.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057775122.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:32534174 |
GT |
G |
1bp_deletion | frameshift_variant | 173 | A1,A14,A15,A18,A2,A20,A21,A22,A23,A24,A25,A5,A7,A8,A9,B100,B102,B103,B104,B105,B106,B107,B108,B110,B111,B112,B113,B12,B120,B121,B122,B123,B125,B129,B13,B130,B132,B133,B134,B136,B137,B138,B139,B140,B15,B16,B18,B2,B20,B21,B24,B25,B26,B27,B28,B30,B31,B32,B33,B37,B38,B39,B4,B40,B42,B48,B49,B5,B50,B51,B52,B54,B55,B56,B57,B59,B6,B61,B63,B64,B69,B70,B71,B72,B73,B74,B75,B77,B78,B79,B8,B80,B83,B85,B86,B87,B88,B9,B91,B92,B93,B94,B96,B98,B99,C1,C10,C11,C12,C13,C14,C16,C17,C19,C2,C20,C22,C23,C24,C25,C26,C27,C32,C33,C35,C36,C37,C38,C39,C4,C40,C42,C43,C44,C45,C46,C48,C5,C50,C53,C54,C55,C56,C58,C59,C60,C61,C62,C63,C65,C67,C68,C69,C70,C71,C72,C73,C76,C77,C78,C79,C80,C81,C82,C84,C87,D10,D11,D2,D5,D6,D7,D8 |
Chr7:32534190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,A4,B48,B77 |
Chr7:32534213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B72,B94,C17,C34,C9 |
Chr7:32534218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B82 |
Chr7:32534226 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:32534240 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr7:32534243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B82,C17,C18 |
Chr7:32534264 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,B80 |
Chr7:32534284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B49,B79 |
Chr7:32534286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,C47 |
Chr7:32534293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B127,B24,B36,B53,D6 |
Chr7:32534298 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B67 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。