Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G003095

染色体: Chr07 坐标: 32729780-32730521 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G003095
名称SmilChr07G003095
描述uncharacterized SmilChr07G003095
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向32729780 - 32730521 / +

ID 对照

NCBI Gene IDLOC130994107
GeneID130994107
locus_tag-
NCBI NameLOC130994107
原始查询LOC130994107

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high
产物hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high
ArabidopsisAT5G33406 (AT5G33406)
hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]
identity=49.3; qcov=0.99; evalue=4.38e-63; confidence=high
RiceOs09g0499600
-
identity=37.1; qcov=0.928; evalue=6.49e-35; confidence=medium
GOGO:0046983 (protein dimerization activity)
KEGG-
PfamPF05699 (Dimer_Tnp_hAT)
InterPro-
eggNOG-
NRGeneID:130994107

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057775125.1
2 Chromosome 染色体 0.00000 XP_057775125.1
3 Centromere 着丝粒 0.00000 XP_057775125.1
4 Chromatin 染色质 0.00000 XP_057775125.1
5 Telomere 端粒 0.00000 XP_057775125.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:32729809 G A EMS_canonical_SNV CDS_variant 5 A19,B34,C37,C38,C79
Chr7:32729811 C T EMS_canonical_SNV CDS_variant 2 B34,B45
Chr7:32729816 AT A 1bp_deletion frameshift_variant 1 B104
Chr7:32729816 AT A 1bp_deletion CDS_variant 1 B104
Chr7:32729845 C T EMS_canonical_SNV CDS_variant 2 B34,B45
Chr7:32729884 C T EMS_canonical_SNV CDS_variant 3 B34,B45,C6
Chr7:32729970 C T EMS_canonical_SNV CDS_variant 2 B71,C60
Chr7:32729997 C T EMS_canonical_SNV CDS_variant 5 B51,C3,C30,C44,C70
Chr7:32729998 G A EMS_canonical_SNV CDS_variant 1 B45
Chr7:32730016 G A EMS_canonical_SNV CDS_variant 5 B51,C3,C30,C44,C70
Chr7:32730027 C T EMS_canonical_SNV CDS_variant 2 B78,D7
Chr7:32730034 G A EMS_canonical_SNV stop_gained 2 B34,B45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057775125.1
209 aa
N
1
104
209
Dimer_Tnp_hAT
C
PF05699 Dimer_Tnp_hAT 78-141 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057775125.1 Pfam PF05699 Dimer_Tnp_hAT Domain 78 141 8.7e-12 45.4 hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057919142.1
ATGTTCGGCCTCATCGACCTCTACATGCAGCCAGGTATTTTTTTGAATCCCAAGTTTTTCTACTACGGTCCAGATGAGATGTCTCAAGATGAGGAAGTCATGAACGGATTGTATGGTTCAATTACAAAATTAACCAAGTCTGATGACATAGAAGATGAAATACTCAAGGAGTTGGTTACTTACAAAAATGCAGATGGAATTTTTGCTAAATCGACTGCGAAAAGGCAAAGAAATCTGATCTCGCCGGCTGAATGGTGGGG...

CDS

1 records

下载 CDS FASTA
LOC130994107
ATGTTCGGCCTCATCGACCTCTACATGCAGCCAGGTATTTTTTTGAATCCCAAGTTTTTCTACTACGGTCCAGATGAGATGTCTCAAGATGAGGAAGTCATGAACGGATTGTATGGTTCAATTACAAAATTAACCAAGTCTGATGACATAGAAGATGAAATACTCAAGGAGTTGGTTACTTACAAAAATGCAGATGGAATTTTTGCTAAATCGACTGCGAAAAGGCAAAGAAATCTGATCTCGCCGGCTGAATGGTGGGG...

Protein

1 records

下载 Protein FASTA
XP_057775125.1
MFGLIDLYMQPGIFLNPKFFYYGPDEMSQDEEVMNGLYGSITKLTKSDDIEDEILKELVTYKNADGIFAKSTAKRQRNLISPAEWWGLYGASTPNLQKSAIRILSLTCSSSGCERNWSVFENKRNRLQQQRLNNLIFIKYNRALRCRFDKRDTIDPIILDNGVDNENEWMVGRMENGEDILVFDNDDLNWGDVETAMGVNEEPYQLRGS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器