当前解析结果
SmilChr07G003202| 统一新 Gene ID | SmilChr07G003202 |
|---|---|
| 名称 | SmilChr07G003202 |
| 描述 | uncharacterized SmilChr07G003202 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 34217680 - 34222457 / - |
| NCBI Gene ID | LOC130994134 |
|---|---|
| GeneID | 130994134 |
| locus_tag | - |
| NCBI Name | LOC130994134 |
| 原始查询 | LOC130994134 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Zn-dependent exopeptidases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843062]; symbol=AT1G67420; hit=AT1G67420; species=arabidopsis; confidence=high |
| 产物 | Zn-dependent exopeptidases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843062]; symbol=AT1G67420; hit=AT1G67420; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G67420 (AT1G67420)Zn-dependent exopeptidases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843062] identity=51.2; qcov=0.863; evalue=3.35e-170; confidence=high |
| Rice | Os07g0295800- identity=53.4; qcov=0.859; evalue=1.47e-166; confidence=high |
| GO | GO:0005747 (GO:0005747) |
| KEGG | - |
| Pfam | PF17250 (NDUFB11); PF22248 (ERMP1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994134 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057775152.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057775152.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057775152.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775152.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775152.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:34217870 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B128,B68,C17,C58,C61 |
Chr7:34217881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr7:34218153 |
TGA |
T |
2bp_deletion | frameshift_variant | 9 | A14,B115,B34,B64,B7,B84,B88,C38,C50 |
Chr7:34218496 |
AG |
A |
1bp_deletion | frameshift_variant | 6 | B117,B139,B4,B41,B75,C20 |
Chr7:34219090 |
ATC |
A |
2bp_deletion | frameshift_variant | 2 | B61,C19 |
Chr7:34219090 |
ATC |
A |
2bp_deletion | CDS_variant | 2 | B61,C19 |
Chr7:34219197 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C73,D4 |
Chr7:34219851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr7:34221432 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr7:34221652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057775152.1PF17250
NDUFB11 1-76 aa
PF22248
ERMP1_C 314-537 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775152.1 |
Pfam | PF17250 |
NDUFB11 | Family | 1 | 76 | 1.7e-39 | 135.1 | NADH-ubiquinone oxidoreductase 11 kDa subunit |
XP_057775152.1 |
Pfam | PF22248 |
ERMP1_C | Domain | 314 | 537 | 2.7e-27 | 96.4 | Endoplasmic reticulum metallopeptidase 1, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。