Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003544`

染色体: Chr01 坐标: 54032725-54035627 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003544`
名称	SmilChr01G003544
描述	UDP-rhamnose/UDP-galactose transporter 5-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	54032725 - 54035627 / `+`

ID 对照

NCBI Gene ID	`LOC130994149`
GeneID	`130994149`
locus_tag	`-`
NCBI Name	`LOC130994149`
原始查询	`LOC130994149`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-rhamnose/UDP-galactose transporter 5-like
产物	UDP-rhamnose/UDP-galactose transporter 5-like
Arabidopsis	`AT4G09810` (AT4G09810) Nucleotide-sugar transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:826570] identity=76.4; qcov=0.92; evalue=0; confidence=high
Rice	`Os05g0215800` - identity=68.9; qcov=1.01; evalue=1.55e-178; confidence=high
GO	GO:0005459 (UDP-galactose transmembrane transporter activity); GO:0005794 (Golgi apparatus); GO:0015297 (antiporter activity)
KEGG	-
Pfam	PF03151 (TPT)
InterPro	-
eggNOG	-
NR	GeneID:130994149

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057775165.1`
2	Trans-golgi network	Trans-golgi network	0.20000	`XP_057775165.1`
3	Nucleus	细胞核	0.00000	`XP_057775165.1`
4	Chromosome	染色体	0.00000	`XP_057775165.1`
5	Centromere	着丝粒	0.00000	`XP_057775165.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:54034356`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B106,C2,C49
`Chr1:54034370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B106,B115,C2,C49
`Chr1:54034409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,B115,C49
`Chr1:54034585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr1:54034678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B106
`Chr1:54034922`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr1:54034950`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B17,B74,C45,C73
`Chr1:54035325`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B110,B29,B87
`Chr1:54035333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775165.1

336 aa

168

336

TPT

PF03151 TPT 23-297 aa

XP_057775167.1

336 aa

168

336

TPT

PF03151 TPT 23-297 aa

XP_057775172.1

336 aa

168

336

TPT

PF03151 TPT 23-297 aa

XP_057775174.1

336 aa

168

336

TPT

PF03151 TPT 23-297 aa

XP_057775176.1

336 aa

168

336

TPT

PF03151 TPT 23-297 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775165.1`	Pfam	`PF03151`	TPT	Family	23	297	7e-15	55.9	Triose-phosphate Transporter family
`XP_057775167.1`	Pfam	`PF03151`	TPT	Family	23	297	7e-15	55.9	Triose-phosphate Transporter family
`XP_057775172.1`	Pfam	`PF03151`	TPT	Family	23	297	7e-15	55.9	Triose-phosphate Transporter family
`XP_057775174.1`	Pfam	`PF03151`	TPT	Family	23	297	7e-15	55.9	Triose-phosphate Transporter family
`XP_057775176.1`	Pfam	`PF03151`	TPT	Family	23	297	7e-15	55.9	Triose-phosphate Transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057919184.1
GTAGTTTGCAGTTAGCTCATCTGTTCGCTGTGATCATCACACCAAAAACAAAAACATTCCATCTTTTTTTGCAGAGTGATTCTTGAGAAATTCTTCCCCTAATCAAATCCCCGACTCCTAGACAAGGCCGGCACTCACGACCCATGTTAGAATAATAGTAGAGAGAGAAAGAGAGAGAGAGAGACGACTAGTTGACAAGACGGCTGGAATTCTGCATCACAGAGTCCACGTTTTTTCCATAATATCTCCACTGATTTCAT...

XM_057919189.1
GTAGTTTGCAGTTAGCTCATCTGTTCGCTGTGATCATCACACCAAAAACAAAAACATTCCATCTTTTTTTGCAGAGTGATTCTTGAGAAATTCTTCCCCTAATCAAATCCCCGACTCCTAGACAAGGCCGGCACTCACGACCCATGTTAGAATAATAGTAGAGAGAGAAAGAGAGAGAGAGAGACGACTAGTTGACAAGACGGCTGGAATTCTGCATCACAGAGTCCACGTTTTTTCCATAATATCTCCACTGATTTCAT...

CDS

5 records

下载 CDS FASTA

LOC130994149
ATGTCTCCGAAAGGCAAGGAGGAAAACAAGGTGACTCTTGATTTGGCAGCATGGTTGTTCAACATTGTCACCTCGGTTGGAATCATCATTGTCAACAAAACTTTGATGGCTTCCTACGGTTTCACTTTTGCTACAACTTTGACTGGCCTGCATTTTGCTGCCACGACCATGATGACTCTCATCCTCAAACGGCATGGATACATCCAGAGCTCGACTCTGCCAGTGTCGGATCTTGTGAAGTTTGTTTTGTTTGCGAATTT...

Protein

5 records

下载 Protein FASTA

XP_057775165.1
MSPKGKEENKVTLDLAAWLFNIVTSVGIIIVNKTLMASYGFTFATTLTGLHFAATTMMTLILKRHGYIQSSTLPVSDLVKFVLFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCLLEVVLDRVRYSRDTKLSILVVLLGVAICTVNDVSVNAKGFVAALIAVWSTSLQQYFVHYLQRKHSIGSFNLLGHTAPPQAASLLLVGPLMDYWLTSKRVDAYHYTMSSVMFVGISCAIAIGTNLSQFICIGRFTAVSFQVLGH...

XP_057775167.1
MSPKGKEENKVTLDLAAWLFNIVTSVGIIIVNKTLMASYGFTFATTLTGLHFAATTMMTLILKRHGYIQSSTLPVSDLVKFVLFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCLLEVVLDRVRYSRDTKLSILVVLLGVAICTVNDVSVNAKGFVAALIAVWSTSLQQYFVHYLQRKHSIGSFNLLGHTAPPQAASLLLVGPLMDYWLTSKRVDAYHYTMSSVMFVGISCAIAIGTNLSQFICIGRFTAVSFQVLGH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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