当前解析结果
SmilChr07G003344| 统一新 Gene ID | SmilChr07G003344 |
|---|---|
| 名称 | SmilChr07G003344 |
| 描述 | uncharacterized SmilChr07G003344 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 35838530 - 35851941 / - |
| NCBI Gene ID | LOC130994162 |
|---|---|
| GeneID | 130994162 |
| locus_tag | - |
| NCBI Name | LOC130994162 |
| 原始查询 | LOC130994162 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high |
| 产物 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G19260 (AT1G19260)TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=46; qcov=0.996; evalue=0; confidence=high |
| Rice | Os02g0301400- identity=34.6; qcov=0.593; evalue=3.31e-76; confidence=low |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371); PF27073 (FAM200-ZBED5_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994162 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775178.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057775178.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775178.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775178.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775178.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:35838549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B17,C57 |
Chr7:35838554 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A6,B39,C59,C71,C75 |
Chr7:35838562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B17,B79,C57 |
Chr7:35838566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B17,B79,C57 |
Chr7:35838567 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B17,B79,C57 |
Chr7:35838575 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B17,B79,C57 |
Chr7:35838583 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A6,C59,C71,C75 |
Chr7:35838588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B39,B63,C18,C63 |
Chr7:35838595 |
G |
A |
EMS_canonical_SNV | stop_gained | 21 | A11,B109,B2,B20,B3,B38,B43,B51,B69,B76,B78,B79,B90,C15,C16,C45,C57,C66,C73,C75,D1 |
Chr7:35838598 |
GA |
G |
1bp_deletion | frameshift_variant | 8 | A11,B2,B20,B69,C15,C45,C73,C75 |
Chr7:35838650 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,B22,B42,B5,D8 |
Chr7:35838727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B44,B76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775178.1PF14291
DUF4371 135-372 aa
PF27073
FAM200-ZBED5_RNase-like 287-378 aa
PF05699
Dimer_Tnp_hAT 666-732 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775178.1 |
Pfam | PF14291 |
DUF4371 | Domain | 135 | 372 | 2.2e-95 | 319.4 | ZMYM1/FAM200, RNase-like domain |
XP_057775178.1 |
Pfam | PF27073 |
FAM200-ZBED5_RNase-like | Domain | 287 | 378 | 2.6e-09 | 37.7 | FAM200/ZBED5 RNase-like |
XP_057775178.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 666 | 732 | 2.6e-08 | 34.2 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。