当前解析结果
SmilChr07G003414| 统一新 Gene ID | SmilChr07G003414 |
|---|---|
| 名称 | SmilChr07G003414 |
| 描述 | uncharacterized SmilChr07G003414 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 37207342 - 37210785 / + |
| NCBI Gene ID | LOC130994185 |
|---|---|
| GeneID | 130994185 |
| locus_tag | - |
| NCBI Name | LOC130994185 |
| 原始查询 | LOC130994185 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=26.9; qcov=0.13; evalue=3.88e-10; confidence=weak |
| Rice | Os08g0202300- identity=31.4; qcov=0.33; evalue=1.26e-59; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF29688 (TnsB_C); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994185 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057775200.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057775200.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775200.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775200.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775200.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:37207366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,B95 |
Chr7:37207401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr7:37207452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B51,B59,C59,D1 |
Chr7:37207471 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | A3 |
Chr7:37207471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr7:37207478 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,C54 |
Chr7:37207520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B140,B56,C48,C83 |
Chr7:37207545 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B56 |
Chr7:37207560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,B20,C82 |
Chr7:37207606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B59,B82,C13,D4 |
Chr7:37207662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:37207715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775200.1PF00078
RVT_1 206-365 aa
PF17919
RT_RNaseH_2 428-526 aa
PF17917
RT_RNaseH 456-555 aa
PF13456
RVT_3 590-709 aa
PF17921
Integrase_H2C2 798-849 aa
PF00665
rve 864-962 aa
PF29688
TnsB_C 924-983 aa
PF31073
DUF8803 1087-1146 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775200.1 |
Pfam | PF00078 |
RVT_1 | Domain | 206 | 365 | 7.1e-34 | 118.2 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057775200.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 428 | 526 | 1.2e-18 | 67.7 | RNase H-like domain found in reverse transcriptase |
XP_057775200.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 456 | 555 | 4.7e-11 | 43.5 | RNase H-like domain found in reverse transcriptase |
XP_057775200.1 |
Pfam | PF13456 |
RVT_3 | Domain | 590 | 709 | 5.3e-17 | 62.6 | Reverse transcriptase-like |
XP_057775200.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 798 | 849 | 3.5e-10 | 40.6 | Integrase zinc binding domain |
XP_057775200.1 |
Pfam | PF00665 |
rve | Domain | 864 | 962 | 7.1e-19 | 68.7 | Integrase core domain |
XP_057775200.1 |
Pfam | PF29688 |
TnsB_C | Domain | 924 | 983 | 7.4e-10 | 39.5 | TnsB C-terminal domain |
XP_057775200.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1087 | 1146 | 8.6e-23 | 80.7 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。