当前解析结果
SmilChr07G003434| 统一新 Gene ID | SmilChr07G003434 |
|---|---|
| 名称 | SmilChr07G003434 |
| 描述 | uncharacterized SmilChr07G003434 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 37774359 - 37775399 / - |
| NCBI Gene ID | LOC130994192 |
|---|---|
| GeneID | 130994192 |
| locus_tag | - |
| NCBI Name | LOC130994192 |
| 原始查询 | LOC130994192 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=25.4; qcov=0.488; evalue=8.82e-18; confidence=low |
| Rice | Os12g0156200- identity=21.1; qcov=0.506; evalue=1.98e-08; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994192 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775207.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057775207.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057775207.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775207.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775207.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:37774378 |
TG |
T |
1bp_deletion | frameshift_variant | 31 | A21,A3,A6,A7,A8,B100,B101,B103,B106,B114,B12,B13,B37,B4,B40,B50,B56,B57,B60,B66,B67,B7,B73,B91,C16,C30,C78,C84,C9,D11,D3 |
Chr7:37774439 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B138,C11 |
Chr7:37774450 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B109,B111 |
Chr7:37774455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr7:37774459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,B85 |
Chr7:37774484 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B123,B49 |
Chr7:37774490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:37774492 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,B21 |
Chr7:37774493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B133,B52,C55,C73,D3 |
Chr7:37774513 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,C2,D4 |
Chr7:37774519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,B98,C48 |
Chr7:37774541 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,C70 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。