当前解析结果
SmilChr07G003489| 统一新 Gene ID | SmilChr07G003489 |
|---|---|
| 名称 | SmilChr07G003489 |
| 描述 | uncharacterized SmilChr07G003489 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 39458740 - 39460351 / - |
| NCBI Gene ID | LOC130994208 |
|---|---|
| GeneID | 130994208 |
| locus_tag | - |
| NCBI Name | LOC130994208 |
| 原始查询 | LOC130994208 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0597300; species=rice; confidence=low |
| 产物 | hit=Os12g0597300; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=25.5; qcov=0.917; evalue=9.33e-37; confidence=low |
| Rice | Os12g0597300- identity=27.7; qcov=0.943; evalue=5.68e-45; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994208 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775225.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057775225.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775225.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775225.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775225.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:39458740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr7:39458766 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B129,B90,B92,C21,D10 |
Chr7:39458768 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B107,C4,C71 |
Chr7:39458773 |
T |
TC |
1bp_insertion | frameshift_variant | 34 | A7,B100,B102,B111,B121,B126,B127,B133,B136,B2,B23,B37,B55,B60,B66,B70,B81,B91,B98,C11,C16,C17,C21,C27,C36,C5,C52,C56,C65,C67,C69,C79,D3,D8 |
Chr7:39458812 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:39458820 |
G |
A |
EMS_canonical_SNV | stop_gained | 77 | A1,A19,A2,A20,A22,A24,A3,A4,A5,A9,B1,B104,B106,B109,B110,B114,B120,B122,B129,B130,B132,B134,B135,B137,B139,B17,B19,B26,B28,B3,B44,B48,B54,B58,B59,B61,B63,B65,B69,B73,B74,B75,B76,B77,B78,B84,B89,B95,C1,C17,C18,C19,C22,C23,C26,C28,C30,C31,C35,C36,C37,C4,C41,C45,C46,C50,C53,C54,C58,C67,C73,C74,C77,C82,C85,D11,D5 |
Chr7:39458841 |
G |
A |
EMS_canonical_SNV | stop_gained | 40 | A7,A9,B10,B100,B102,B114,B121,B126,B127,B133,B136,B2,B23,B37,B55,B60,B66,B70,B74,B81,B91,B98,C11,C16,C17,C20,C21,C27,C3,C36,C5,C52,C56,C65,C67,C69,C72,C79,D3,D8 |
Chr7:39458871 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,B140,C25 |
Chr7:39458913 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A15,B112,B33,C81 |
Chr7:39458913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B112,B33,C81 |
Chr7:39458914 |
TG |
T |
1bp_deletion | frameshift_variant | 4 | B129,B90,C21,D10 |
Chr7:39458914 |
TG |
T |
1bp_deletion | CDS_variant | 4 | B129,B90,C21,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775225.1PF00872
Transposase_mut 41-140 aa
PF10551
MULE 42-136 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775225.1 |
Pfam | PF00872 |
Transposase_mut | Family | 41 | 140 | 1.7e-11 | 44.4 | Transposase, Mutator family |
XP_057775225.1 |
Pfam | PF10551 |
MULE | Domain | 42 | 136 | 1.1e-22 | 80.9 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。