当前解析结果
SmilChr07G003675| 统一新 Gene ID | SmilChr07G003675 |
|---|---|
| 名称 | SmilChr07G003675 |
| 描述 | BTB/POZ domain-containing protein At3g50780-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 44115778 - 44117626 / + |
| NCBI Gene ID | LOC130994257 |
|---|---|
| GeneID | 130994257 |
| locus_tag | - |
| NCBI Name | LOC130994257 |
| 原始查询 | LOC130994257 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BTB/POZ domain-containing protein At3g50780-like |
| 产物 | BTB/POZ domain-containing protein At3g50780-like |
| Arabidopsis | AT3G50780 (AT3G50780)BTB/POZ domain protein [Source:NCBI gene (formerly Entrezgene);Acc:824242] identity=63.7; qcov=0.619; evalue=9.02e-34; confidence=medium |
| Rice | Os03g0769400 (OSJNBb0106M04.9)- identity=61.5; qcov=0.619; evalue=3.71e-30; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994257 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057775280.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057775280.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057775280.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775280.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775280.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:44116427 |
ACG |
A |
2bp_deletion | frameshift_variant | 1 | B63 |
Chr7:44116427 |
ACG |
A |
2bp_deletion | CDS_variant | 1 | B63 |
Chr7:44117200 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B62,C69 |
Chr7:44117253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B126,B138,C24,C37,C40 |
Chr7:44117272 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B109,B115,C23 |
Chr7:44117302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B18,B80,B86 |
Chr7:44117311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B51,B85 |
Chr7:44117312 |
C |
CA |
1bp_insertion | frameshift_variant | 119 | A11,A13,A16,A18,A23,A24,A25,A3,A5,B10,B101,B102,B103,B104,B105,B107,B109,B112,B114,B118,B123,B124,B126,B127,B129,B130,B131,B133,B134,B138,B139,B14,B18,B22,B27,B28,B30,B31,B32,B34,B36,B38,B39,B40,B41,B44,B45,B46,B48,B5,B55,B56,B57,B59,B6,B66,B68,B69,B70,B76,B77,B80,B82,B84,B85,B88,B89,B9,B90,B98,C10,C11,C13,C14,C16,C18,C2,C22,C24,C25,C27,C28,C29,C31,C32,C33,C34,C35,C37,C40,C41,C42,C43,C46,C47,C48,C49,C50,C51,C55,C57,C62,C67,C68,C69,C7,C71,C73,C74,C79,C8,C80,C83,C84,C86,C9,D10,D4,D6 |
Chr7:44117326 |
G |
GA |
1bp_insertion | frameshift_variant | 5 | B3,B58,B76,B8,C19 |
Chr7:44117326 |
G |
GA |
1bp_insertion | CDS_variant | 5 | B3,B58,B76,B8,C19 |
Chr7:44117355 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:44117473 |
TCG |
T |
2bp_deletion | frameshift_variant | 38 | A13,A16,A21,A23,B1,B103,B111,B115,B126,B136,B31,B32,B36,B43,B47,B55,B62,B63,B72,B81,B86,B93,B94,B95,C11,C26,C29,C47,C52,C72,C74,C76,C78,C82,C86,D1,D11,D8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。