当前解析结果
SmilChr07G003691| 统一新 Gene ID | SmilChr07G003691 |
|---|---|
| 名称 | SmilChr07G003691 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 44433640 - 44436345 / - |
| NCBI Gene ID | LOC130994265 |
|---|---|
| GeneID | 130994265 |
| locus_tag | - |
| NCBI Name | LOC130994265 |
| 原始查询 | LOC130994265 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=29; qcov=0.557; evalue=1.78e-39; confidence=low |
| Rice | Os02g0202800 (OJ1135_F06.10-2)- identity=28.5; qcov=0.522; evalue=4.84e-41; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994265 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775291.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057775291.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057775291.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057775291.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057775291.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:44433699 |
G |
A |
EMS_canonical_SNV | stop_gained | 49 | A11,A19,A2,A22,A23,A6,A7,B105,B107,B109,B11,B115,B138,B20,B41,B49,B56,B72,B73,B76,B79,B80,B83,B89,B93,B99,C11,C16,C19,C22,C3,C33,C34,C41,C48,C51,C52,C58,C59,C60,C61,C65,C69,C78,C84,C86,C9,D2,D5 |
Chr7:44433729 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C5 |
Chr7:44433729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr7:44433837 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,C5 |
Chr7:44433839 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:44433860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr7:44433882 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C27,C63 |
Chr7:44433934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,C27,C37,C39,C54 |
Chr7:44434029 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr7:44434037 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:44434141 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr7:44434233 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | A16,B128,B15 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775291.1PF03101
FAR1 41-136 aa
PF21056
ZSWIM1-3_RNaseH-like 226-334 aa
PF10551
MULE 257-340 aa
PF04434
SWIM 427-453 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775291.1 |
Pfam | PF03101 |
FAR1 | Domain | 41 | 136 | 2.3e-11 | 45.0 | FAR1 DNA-binding domain |
XP_057775291.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 226 | 334 | 1.8e-08 | 35.1 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057775291.1 |
Pfam | PF10551 |
MULE | Domain | 257 | 340 | 1.9e-20 | 73.8 | MULE transposase domain |
XP_057775291.1 |
Pfam | PF04434 |
SWIM | Domain | 427 | 453 | 0.0006 | 20.0 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。