当前解析结果
SmilChr07G003848| 统一新 Gene ID | SmilChr07G003848 |
|---|---|
| 名称 | SmilChr07G003848 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 47725130 - 47725852 / - |
| NCBI Gene ID | LOC130994311 |
|---|---|
| GeneID | 130994311 |
| locus_tag | - |
| NCBI Name | LOC130994311 |
| 原始查询 | LOC130994311 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=26.5; qcov=0.975; evalue=1.43e-21; confidence=low |
| Rice | Os06g0166100- identity=29.7; qcov=0.983; evalue=4.84e-29; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994311 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057775339.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057775339.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775339.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775339.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775339.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:47725248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B9,C10,C79 |
Chr7:47725253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B127,B84,C79 |
Chr7:47725391 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr7:47725417 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,C10 |
Chr7:47725450 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B132,B89,C55 |
Chr7:47725450 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B132,B89,C55 |
Chr7:47725459 |
G |
A |
EMS_canonical_SNV | stop_gained | 19 | A1,A13,A15,B137,B138,B20,B43,B54,B59,B7,B91,C2,C3,C45,C49,C60,C79,C82,C85 |
Chr7:47725492 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B85 |
Chr7:47725551 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B99,C5,C71 |
Chr7:47725570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B30,B39,B79 |
Chr7:47725616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,B48 |
Chr7:47725620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,B48 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。