Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G003915

染色体: Chr07 坐标: 49399709-49401422 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G003915
名称SmilChr07G003915
描述uncharacterized SmilChr07G003915
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向49399709 - 49401422 / +

ID 对照

NCBI Gene IDLOC130994327
GeneID130994327
locus_tag-
NCBI NameLOC130994327
原始查询LOC130994327

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013]; symbol=AT3G24255; hit=AT3G24255; species=arabidopsis; confidence=low
产物RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013]; symbol=AT3G24255; hit=AT3G24255; species=arabidopsis; confidence=low
ArabidopsisAT3G24255 (AT3G24255)
RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013]
identity=32.3; qcov=0.668; evalue=3.09e-31; confidence=low
RiceOs03g0643433
-
identity=27.4; qcov=0.696; evalue=2.16e-28; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130994327

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057775358.1
2 Cytosol 细胞质基质 0.60000 XP_057775358.1
3 Nucleus 细胞核 0.00000 XP_057775358.1
4 Chromosome 染色体 0.00000 XP_057775358.1
5 Centromere 着丝粒 0.00000 XP_057775358.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:49399726 G A EMS_canonical_SNV CDS_variant 1 A3
Chr7:49399740 C T EMS_canonical_SNV CDS_variant 2 B119,C31
Chr7:49399742 C T EMS_canonical_SNV CDS_variant 1 B140
Chr7:49399809 G A EMS_canonical_SNV CDS_variant 2 B65,D6
Chr7:49399839 C T EMS_canonical_SNV CDS_variant 4 A19,B50,B76,C86
Chr7:49399842 G A EMS_canonical_SNV CDS_variant 3 B129,B33,B61
Chr7:49399843 C T EMS_canonical_SNV CDS_variant 4 A19,B50,B76,C86
Chr7:49399854 G A EMS_canonical_SNV CDS_variant 2 B65,D6
Chr7:49399868 C T EMS_canonical_SNV stop_gained 2 B65,D6
Chr7:49399868 C T EMS_canonical_SNV CDS_variant 2 B65,D6
Chr7:49399873 C T EMS_canonical_SNV CDS_variant 3 B50,B76,C86
Chr7:49399887 G A EMS_canonical_SNV CDS_variant 5 A23,B120,B59,C36,C59

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057919375.1
ATGCGGATGAACCGTAAGCATCTTTTCCCCACGCACTTGTTGTATGCGGATGACATACTTATTTTCTACAAGGCCACCATGCAGAATGCAAGAGCTATTCGTGACATCTTCCTTTATTATGGGGTCATCTCGGGCCAAGATTGCAGTAGAGAAAAGTCGCAGCTCTTTTTTGCAAAAGGCATTCTGTTATGCTATCAAAGGCAGATCTCACGAGCTCTGGGTTTCTCGGTTAAAAAGCTGCCGACGGTGTACTTGGGGGT...

CDS

1 records

下载 CDS FASTA
LOC130994327
ATGCGGATGAACCGTAAGCATCTTTTCCCCACGCACTTGTTGTATGCGGATGACATACTTATTTTCTACAAGGCCACCATGCAGAATGCAAGAGCTATTCGTGACATCTTCCTTTATTATGGGGTCATCTCGGGCCAAGATTGCAGTAGAGAAAAGTCGCAGCTCTTTTTTGCAAAAGGCATTCTGTTATGCTATCAAAGGCAGATCTCACGAGCTCTGGGTTTCTCGGTTAAAAAGCTGCCGACGGTGTACTTGGGGGT...

Protein

1 records

下载 Protein FASTA
XP_057775358.1
MRMNRKHLFPTHLLYADDILIFYKATMQNARAIRDIFLYYGVISGQDCSREKSQLFFAKGILLCYQRQISRALGFSVKKLPTVYLGVPLFAGSPRAVHLAAIKDKIINKFSRWKGMQLSMAGRLCLVKSIIQSSLVHTMMIYKWPGSLIKDLDKACRNFIWSGDINKKPSFMVSWDRVCGIKEERGLGVRSFDMINEAFLMKLAWNVIKGKKFGYDILHSRYLDEFGRSRETLLASLVWGWIKQLVLELIADSYCLLGSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器