当前解析结果
SmilChr07G003915| 统一新 Gene ID | SmilChr07G003915 |
|---|---|
| 名称 | SmilChr07G003915 |
| 描述 | uncharacterized SmilChr07G003915 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 49399709 - 49401422 / + |
| NCBI Gene ID | LOC130994327 |
|---|---|
| GeneID | 130994327 |
| locus_tag | - |
| NCBI Name | LOC130994327 |
| 原始查询 | LOC130994327 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013]; symbol=AT3G24255; hit=AT3G24255; species=arabidopsis; confidence=low |
| 产物 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013]; symbol=AT3G24255; hit=AT3G24255; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=32.3; qcov=0.668; evalue=3.09e-31; confidence=low |
| Rice | Os03g0643433- identity=27.4; qcov=0.696; evalue=2.16e-28; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994327 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775358.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057775358.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775358.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775358.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775358.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:49399726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr7:49399740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B119,C31 |
Chr7:49399742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:49399809 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,D6 |
Chr7:49399839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B50,B76,C86 |
Chr7:49399842 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B33,B61 |
Chr7:49399843 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B50,B76,C86 |
Chr7:49399854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,D6 |
Chr7:49399868 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B65,D6 |
Chr7:49399868 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,D6 |
Chr7:49399873 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B50,B76,C86 |
Chr7:49399887 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A23,B120,B59,C36,C59 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。