Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003988`

染色体: Chr07 坐标: 50926275-50927309 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003988`
名称	SmilChr07G003988
描述	uncharacterized protein At2g29880-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	50926275 - 50927309 / `+`

ID 对照

NCBI Gene ID	`LOC130994347`
GeneID	`130994347`
locus_tag	`-`
NCBI Name	`LOC130994347`
原始查询	`LOC130994347`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817538]; symbol=AT2G29880; hit=AT2G29880; species=arabidopsis; confidence=medium
产物	Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817538]; symbol=AT2G29880; hit=AT2G29880; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G29880` (AT2G29880) Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817538] identity=35; qcov=0.984; evalue=2.06e-53; confidence=medium
Rice	`-` -
GO	-
KEGG	-
Pfam	PF12776 (Myb_DNA-bind_3); PF24769 (At2g29880_C)
InterPro	-
eggNOG	-
NR	GeneID:130994347

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775379.1`
2	Chromosome	染色体	0.00000	`XP_057775379.1`
3	Centromere	着丝粒	0.00000	`XP_057775379.1`
4	Chromatin	染色质	0.00000	`XP_057775379.1`
5	Telomere	端粒	0.00000	`XP_057775379.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:50926334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,B59,C59
`Chr7:50926374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr7:50926535`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B74
`Chr7:50926535`	`AC`	`A`	1bp_deletion	CDS_variant	1	B74
`Chr7:50926607`	`G`	`A`	EMS_canonical_SNV	stop_gained	25	A7,A9,B105,B128,B131,B140,B18,B40,B57,B69,B80,B92,B93,C1,C33,C40,C44,C45,C51,C53,C6,C64,C73,C81,C83
`Chr7:50926737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,C3,C7
`Chr7:50926741`	`GT`	`G`	1bp_deletion	frameshift_variant	1	C74
`Chr7:50926741`	`GT`	`G`	1bp_deletion	CDS_variant	1	C74
`Chr7:50926765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,A19,C16,C39,C7
`Chr7:50926788`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B110
`Chr7:50926788`	`GC`	`G`	1bp_deletion	CDS_variant	1	B110
`Chr7:50926789`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775379.1

316 aa

158

316

Myb_DNA-bind_3

At2g29880_C

PF12776 Myb_DNA-bind_3 18-114 aa PF24769 At2g29880_C 268-313 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775379.1`	Pfam	`PF12776`	Myb_DNA-bind_3	Domain	18	114	5.3e-16	60.1	Myb/SANT-like DNA-binding domain
`XP_057775379.1`	Pfam	`PF24769`	At2g29880_C	Domain	268	313	1.1e-15	58.4	At2g29880 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919396.1
ATGGGAGAGTCCCAATCACAAGATTCCAAAAAAAGGGCAGTGTATGAAGCATGGACGCAGGAACAAAGTGATGCCTTGTTACGAATTCTGGCTGAATCTGCAACTAGGGGATGGCGCGATAATAGTGGTATATTTAGCAAAGCAACAGTAGAGGAAAGGATATTGCCTGTTCTCAATGAAAAACTTAGGTCCAATAAAAATTATAATCACTACCAAAGTCATATCAAATGGTCTAAGAGCCGTTGGAATGCGTATTCAAC...

CDS

1 records

下载 CDS FASTA

LOC130994347
ATGGGAGAGTCCCAATCACAAGATTCCAAAAAAAGGGCAGTGTATGAAGCATGGACGCAGGAACAAAGTGATGCCTTGTTACGAATTCTGGCTGAATCTGCAACTAGGGGATGGCGCGATAATAGTGGTATATTTAGCAAAGCAACAGTAGAGGAAAGGATATTGCCTGTTCTCAATGAAAAACTTAGGTCCAATAAAAATTATAATCACTACCAAAGTCATATCAAATGGTCTAAGAGCCGTTGGAATGCGTATTCAAC...

Protein

1 records

下载 Protein FASTA

XP_057775379.1
MGESQSQDSKKRAVYEAWTQEQSDALLRILAESATRGWRDNSGIFSKATVEERILPVLNEKLRSNKNYNHYQSHIKWSKSRWNAYSTLLKFNSGFGYDNDTKKFTAPDEVWDAYIEAHPKDAYLRTGSFSDYDELRLAVGNGVAVGRNAIGVGSATDARTIGVDESRGPLIEELNYDAANEAFVVLGEDDPPLSGSKSPLESTQRRAPAKRSRGQFETNSGHTENSSHQELMVEIKKVTSTMDRVESLFVKRDTTLERRE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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