当前解析结果
SmilChr07G004013| 统一新 Gene ID | SmilChr07G004013 |
|---|---|
| 名称 | SmilChr07G004013 |
| 描述 | putative disease resistance protein At3g14460 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 51209464 - 51210036 / - |
| NCBI Gene ID | LOC130994355 |
|---|---|
| GeneID | 130994355 |
| locus_tag | - |
| NCBI Name | LOC130994355 |
| 原始查询 | LOC130994355 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At3g14460 |
| 产物 | putative disease resistance protein At3g14460 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=27.6; qcov=0.858; evalue=7.48e-09; confidence=low |
| Rice | Os07g0521500- identity=32.6; qcov=0.774; evalue=5.35e-14; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994355 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775386.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057775386.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057775386.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775386.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775386.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:51209477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr7:51209483 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | A20,C59 |
Chr7:51209483 |
AT |
A |
1bp_deletion | CDS_variant | 2 | A20,C59 |
Chr7:51209486 |
A |
AAT |
2bp_insertion | frameshift_variant | 1 | C19 |
Chr7:51209486 |
A |
AAT |
2bp_insertion | CDS_variant | 1 | C19 |
Chr7:51209487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C60,C66 |
Chr7:51209562 |
CCA |
C |
2bp_deletion | frameshift_variant | 3 | B7,B90,C53 |
Chr7:51209562 |
CCA |
C |
2bp_deletion | CDS_variant | 3 | B7,B90,C53 |
Chr7:51209572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B36,B96,C30,D10 |
Chr7:51209582 |
TGG |
T |
2bp_deletion | frameshift_variant | 22 | A22,A23,A8,B123,B139,B20,B35,B46,B86,B93,B96,C25,C27,C30,C32,C33,C53,C59,C62,C82,C87,C9 |
Chr7:51209597 |
AGC |
A |
2bp_deletion | frameshift_variant | 20 | A22,A23,B123,B139,B20,B39,B46,B49,B86,B93,B96,C25,C27,C30,C32,C33,C59,C82,C87,C9 |
Chr7:51209624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B35,B96,C30,C53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057775386.1PF25019
LRR_R13L1-DRL21 16-150 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775386.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 16 | 150 | 6.2e-21 | 75.3 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。