当前解析结果
SmilChr07G004091| 统一新 Gene ID | SmilChr07G004091 |
|---|---|
| 名称 | SmilChr07G004091 |
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 52456715 - 52458400 / + |
| NCBI Gene ID | LOC130994378 |
|---|---|
| GeneID | 130994378 |
| locus_tag | - |
| NCBI Name | LOC130994378 |
| 原始查询 | LOC130994378 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 产物 | putative late blight resistance protein homolog R1B-17 |
| Arabidopsis | AT1G58400 (AT1G58400)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842209] identity=26.3; qcov=0.977; evalue=1.07e-24; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=28.4; qcov=0.966; evalue=4.03e-30; confidence=low |
| GO | GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding); GO:0043531 (ADP binding) |
| KEGG | - |
| Pfam | PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994378 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057775406.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057775406.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057775406.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775406.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775406.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:52456717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,D3 |
Chr7:52456720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr7:52456722 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr7:52456733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr7:52456769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr7:52456793 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr7:52456843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B30,B36 |
Chr7:52456863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B112,B30,B36 |
Chr7:52456865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,B52,B71,B80,C55 |
Chr7:52456891 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B112,B30,B36,D6 |
Chr7:52456976 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B30,B85,C25 |
Chr7:52456993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,B85,C25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057775406.1PF23559
WHD_DRP 104-164 aa
PF23598
LRR_14 220-505 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775406.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 104 | 164 | 3.5e-18 | 66.1 | Disease resistance protein Winged helix domain |
XP_057775406.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 220 | 505 | 3.4e-18 | 66.3 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。