当前解析结果
SmilChr07G004274| 统一新 Gene ID | SmilChr07G004274 |
|---|---|
| 名称 | SmilChr07G004274 |
| 描述 | uncharacterized SmilChr07G004274 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 55223924 - 55226539 / - |
| NCBI Gene ID | LOC130994433 |
|---|---|
| GeneID | 130994433 |
| locus_tag | - |
| NCBI Name | LOC130994433 |
| 原始查询 | LOC130994433 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=medium |
| 产物 | hit=Os04g0191000; species=rice; confidence=medium |
| Arabidopsis | ATMG00860- identity=44.3; qcov=0.15; evalue=1.3e-35; confidence=weak |
| Rice | Os04g0191000- identity=40.3; qcov=0.956; evalue=0; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF17919 (RT_RNaseH_2); PF19259 (Ty3_capsid); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994433 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775458.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057775458.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775458.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775458.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775458.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:55223961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr7:55223977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,D9 |
Chr7:55223979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr7:55224009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B100,B78,B97,C47 |
Chr7:55224038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,C47 |
Chr7:55224064 |
T |
TA |
1bp_insertion | frameshift_variant | 7 | B27,B48,B69,B7,B93,C38,C9 |
Chr7:55224074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B17,C48 |
Chr7:55224100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B126,B94 |
Chr7:55224116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr7:55224133 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B16,B25,B3 |
Chr7:55224172 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,C70 |
Chr7:55224173 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B40,B65,B72,C20,C6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775458.1PF03732
PEG10_N-capsid 48-119 aa
PF19259
Ty3_capsid 61-198 aa
PF13650
Asp_protease_2 352-433 aa
PF13975
gag-asp_proteas 352-436 aa
PF08284
RVP_2 355-441 aa
PF30863
PRO_PEG10-RTL1 356-437 aa
PF00078
RVT_1 595-754 aa
PF17919
RT_RNaseH_2 817-866 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775458.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 48 | 119 | 9.5e-15 | 55.4 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057775458.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 61 | 198 | 1.3e-14 | 54.8 | Ty3 transposon capsid-like protein |
XP_057775458.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 352 | 433 | 1.2e-05 | 26.6 | Aspartyl protease |
XP_057775458.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 352 | 436 | 3.8e-07 | 31.3 | gag-polyprotein putative aspartyl protease |
XP_057775458.1 |
Pfam | PF08284 |
RVP_2 | Domain | 355 | 441 | 3.7e-14 | 53.4 | Retroviral aspartyl protease |
XP_057775458.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 356 | 437 | 3.5e-09 | 37.8 | PEG10/RTL1 protease domain |
XP_057775458.1 |
Pfam | PF00078 |
RVT_1 | Domain | 595 | 754 | 6.8e-40 | 137.8 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057775458.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 817 | 866 | 2e-13 | 51.0 | RNase H-like domain found in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。