Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004335`

染色体: Chr07 坐标: 55910942-55915599 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004335`
名称	SmilChr07G004335
描述	uncharacterized SmilChr07G004335
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	55910942 - 55915599 / `+`

ID 对照

NCBI Gene ID	`LOC130994443`
GeneID	`130994443`
locus_tag	`-`
NCBI Name	`LOC130994443`
原始查询	`LOC130994443`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os03g0643433; species=rice; confidence=low
产物	hit=Os03g0643433; species=rice; confidence=low
Arabidopsis	`AT1G43760` (AT1G43760) DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=26.5; qcov=0.361; evalue=1.4e-30; confidence=low
Rice	`Os03g0643433` - identity=32; qcov=0.444; evalue=3.65e-64; confidence=low
GO	GO:0003824 (catalytic activity)
KEGG	-
Pfam	PF00078 (RVT_1); PF03372 (Exo_endo_phos); PF14529 (Exo_endo_phos_2)
InterPro	-
eggNOG	-
NR	GeneID:130994443

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057775468.1`
2	Cytosol	细胞质基质	0.80000	`XP_057775468.1`
3	Nucleus	细胞核	0.40000	`XP_057775468.1`
4	Chromosome	染色体	0.00000	`XP_057775468.1`
5	Centromere	着丝粒	0.00000	`XP_057775468.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:55912716`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr7:55912840`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr7:55912869`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr7:55912890`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr7:55912906`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr7:55912935`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr7:55913731`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,A9,B136,B50,D1
`Chr7:55913756`	`TG`	`T`	1bp_deletion	frameshift_variant	2	B96,C87
`Chr7:55913756`	`TG`	`T`	1bp_deletion	CDS_variant	2	B96,C87
`Chr7:55913768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B35,C51
`Chr7:55913797`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B10
`Chr7:55913826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775468.1

1098 aa

549

1098

Exo_endo_phos

Exo_endo_phos_2

RVT_1

PF03372 Exo_endo_phos 122-330 aa PF14529 Exo_endo_phos_2 208-334 aa PF00078 RVT_1 596-771 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775468.1`	Pfam	`PF03372`	Exo_endo_phos	Domain	122	330	8.3e-12	46.0	Endonuclease/Exonuclease/phosphatase family
`XP_057775468.1`	Pfam	`PF14529`	Exo_endo_phos_2	Domain	208	334	2.4e-09	37.8	Endonuclease-reverse transcriptase
`XP_057775468.1`	Pfam	`PF00078`	RVT_1	Domain	596	771	5.6e-15	56.5	Reverse transcriptase (RNA-dependent DNA polymerase)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919485.1
ATGTCGAACCAAGCGCAAGGAGAGAATATAAGCGATATTCCGGAAAGGGAAGAAGCTGATTCAGTTGTGTACAGCGAATGTCAAGGTGCCAAAAATATTGTCGAGGACAAGGAGTGGAAAGAGGAAGGGCAAAGGATCGAAGAGAACGAGCTTCCGATTTTCAGCTCCGACGAAGGAAGTCGTTCAAAGCAAAGCAAAAGGGGGGAGGAAGTGGCAGAGCAGGAAAGAGAGGGGGAGAACGAAGAAGGCCAGGAGACGAC...

CDS

1 records

下载 CDS FASTA

LOC130994443
ATGTCGAACCAAGCGCAAGGAGAGAATATAAGCGATATTCCGGAAAGGGAAGAAGCTGATTCAGTTGTGTACAGCGAATGTCAAGGTGCCAAAAATATTGTCGAGGACAAGGAGTGGAAAGAGGAAGGGCAAAGGATCGAAGAGAACGAGCTTCCGATTTTCAGCTCCGACGAAGGAAGTCGTTCAAAGCAAAGCAAAAGGGGGGAGGAAGTGGCAGAGCAGGAAAGAGAGGGGGAGAACGAAGAAGGCCAGGAGACGAC...

Protein

1 records

下载 Protein FASTA

XP_057775468.1
MSNQAQGENISDIPEREEADSVVYSECQGAKNIVEDKEWKEEGQRIEENELPIFSSDEGSRSKQSKRGEEVAEQEREGENEEGQETTGGEQISGQQIWDFGKKIGLSSRIPDEDVARQIERDVTDLVKGQKIDFCCLQETKMEVFRDLFCKSWWGSNYTDRAIRNSEGRAGGIVCLWNREVFEASSTWDLPGAVVVNGRYKEGDILCCIINVYAPVGSGDKRILWDALSSIVEQNTDRSVCILGDFNSVRRRDERVGSGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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