Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004551`

染色体: Chr07 坐标: 58238656-58242584 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004551`
名称	SmilChr07G004551
描述	uncharacterized SmilChr07G004551
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58238656 - 58242584 / `-`

ID 对照

NCBI Gene ID	`LOC130994506`
GeneID	`130994506`
locus_tag	`-`
NCBI Name	`LOC130994506`
原始查询	`LOC130994506`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os11g0577650; species=rice; confidence=low
产物	hit=Os11g0577650; species=rice; confidence=low
Arabidopsis	`AT5G41980` (AT5G41980) nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=33.6; qcov=0.361; evalue=2.46e-34; confidence=low
Rice	`Os11g0577650` - identity=49.6; qcov=0.385; evalue=4.31e-69; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13359 (DDE_Tnp_4); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG); PF26138 (DUF8040)
InterPro	-
eggNOG	-
NR	GeneID:130994506

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057775531.1`
2	Cell membrane	细胞膜	0.40000	`XP_057775531.1`
3	Vacuole	液泡	0.20000	`XP_057775531.1`
4	Nucleus	细胞核	0.00000	`XP_057775531.1`
5	Chromosome	染色体	0.00000	`XP_057775531.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58240701`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B30
`Chr7:58240701`	`AT`	`A`	1bp_deletion	CDS_variant	1	B30
`Chr7:58240715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B27,C56
`Chr7:58241922`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B123,B19,C72,C82
`Chr7:58241940`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B91
`Chr7:58241954`	`CA`	`C`	1bp_deletion	frameshift_variant	2	B81,C78
`Chr7:58241954`	`CA`	`C`	1bp_deletion	CDS_variant	2	B81,C78
`Chr7:58241958`	`AT`	`A`	1bp_deletion	frameshift_variant	2	B81,C78
`Chr7:58241958`	`AT`	`A`	1bp_deletion	CDS_variant	2	B81,C78
`Chr7:58241994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,B60
`Chr7:58242048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A19,A5
`Chr7:58242078`	`AG`	`A`	1bp_deletion	frameshift_variant	5	B103,B3,B81,C10,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775531.1

618 aa

309

618

Ank_2

Ank

Ank_4

Ank_5

Ank_2

Ank

Ank_3

PGG

DUF8040

DDE_Tnp_4

PF12796 Ank_2 10-95 aa PF12796 Ank_2 79-165 aa PF00023 Ank 108-131 aa PF13637 Ank_4 147-197 aa PF13857 Ank_5 162-218 aa PF12796 Ank_2 171-222 aa PF00023 Ank 176-201 aa PF13606 Ank_3 176-204 aa PF13962 PGG 260-305 aa PF26138 DUF8040 401-490 aa PF13359 DDE_Tnp_4 522-579 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775531.1`	Pfam	`PF12796`	Ank_2	Repeat	10	95	8.4e-28	97.5	Ankyrin repeats (3 copies)
`XP_057775531.1`	Pfam	`PF12796`	Ank_2	Repeat	79	165	8.4e-28	97.5	Ankyrin repeats (3 copies)
`XP_057775531.1`	Pfam	`PF00023`	Ank	Repeat	108	131	2.6e-19	68.9	Ankyrin repeat
`XP_057775531.1`	Pfam	`PF13637`	Ank_4	Repeat	147	197	2.6e-17	63.2	Ankyrin repeats (many copies)
`XP_057775531.1`	Pfam	`PF13857`	Ank_5	Repeat	162	218	6.1e-16	59.1	Ankyrin repeats (many copies)
`XP_057775531.1`	Pfam	`PF12796`	Ank_2	Repeat	171	222	8.4e-28	97.5	Ankyrin repeats (3 copies)
`XP_057775531.1`	Pfam	`PF00023`	Ank	Repeat	176	201	2.6e-19	68.9	Ankyrin repeat
`XP_057775531.1`	Pfam	`PF13606`	Ank_3	Repeat	176	204	2.2e-20	71.0	Ankyrin repeat
`XP_057775531.1`	Pfam	`PF13962`	PGG	Domain	260	305	3.9e-09	37.0	Domain of unknown function
`XP_057775531.1`	Pfam	`PF26138`	DUF8040	Domain	401	490	1.2e-23	83.5	Domain of unknown function (DUF8040)
`XP_057775531.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	522	579	1.8e-06	28.4	DDE superfamily endonuclease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919548.1
GACCACTTTAAAAATTTGTCTTTATATAAACATCTCCAGAATTCTTGACTGTCTCAACACCATCAACAACATAATCAAGAAATTAATATTCACAATCAGGCAATGGTTCGAGAAGTAATTAGGAAAAAGCTTTACGATGCAGCAACACAAGGTGATGCAACAACGTTTCAACAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCATTTCCCGATTCAAGAAATCTCCTCCACATAGCAACAAGAAGCGGACA...

CDS

1 records

下载 CDS FASTA

LOC130994506
ATGGTTCGAGAAGTAATTAGGAAAAAGCTTTACGATGCAGCAACACAAGGTGATGCAACAACGTTTCAACAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCATTTCCCGATTCAAGAAATCTCCTCCACATAGCAACAAGAAGCGGACAGGCAGCCATTGTCGAGGAGATATTAAGGATCAACCAACATCTAGCCTGGAGTTTGGACTCCCAAAAGTCGTCGTCTCTTCACATCGCAGCAGCAAAAGGGAC...

Protein

1 records

下载 Protein FASTA

XP_057775531.1
MVREVIRKKLYDAATQGDATTFQQLLQEDPYLLDVVSFPDSRNLLHIATRSGQAAIVEEILRINQHLAWSLDSQKSSSLHIAAAKGTVEIASKLLAIAPQTCWLRDCHGMNPVHIAAMNGHVEILEEFIRHDRLPATEKIDHRQTVLHLCVKHGQLRVLQVLVNHFRELVHLQDDYGETVLHLAVRYKQVEIVRYLVENTGVEYQCSRNSNRETALDISLQSPQDTIQSEITKILENITTIKFSNTCLNKVPIEVVLGIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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