当前解析结果
SmilChr07G004552| 统一新 Gene ID | SmilChr07G004552 |
|---|---|
| 名称 | SmilChr07G004552 |
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58244564 - 58245175 / - |
| NCBI Gene ID | LOC130994507 |
|---|---|
| GeneID | 130994507 |
| locus_tag | - |
| NCBI Name | LOC130994507 |
| 原始查询 | LOC130994507 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 产物 | ankyrin repeat-containing protein At5g02620-like |
| Arabidopsis | AT5G02620 (ANK1)ankyrin-like1 [Source:NCBI gene (formerly Entrezgene);Acc:831855] identity=29.9; qcov=0.906; evalue=1.41e-18; confidence=low |
| Rice | Os01g0837000 (OsNPR4)- identity=35.6; qcov=0.734; evalue=3.53e-18; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994507 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057775532.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057775532.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057775532.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775532.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775532.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58244666 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B128 |
Chr7:58244676 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B78,B91,D11 |
Chr7:58244711 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr7:58244735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr7:58244741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr7:58244755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr7:58244825 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B105,B23,B38,B39,C16 |
Chr7:58244924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B5,B71,C15,C5 |
Chr7:58244928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:58245077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775532.1PF12796
Ank_2 10-95 aa
PF12796
Ank_2 45-129 aa
PF12796
Ank_2 79-165 aa
PF00023
Ank 108-130 aa
PF13606
Ank_3 108-130 aa
PF12796
Ank_2 114-194 aa
PF00023
Ank 144-165 aa
PF13637
Ank_4 147-194 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775532.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 10 | 95 | 8.2e-44 | 148.8 | Ankyrin repeats (3 copies) |
XP_057775532.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 45 | 129 | 8.2e-44 | 148.8 | Ankyrin repeats (3 copies) |
XP_057775532.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 79 | 165 | 8.2e-44 | 148.8 | Ankyrin repeats (3 copies) |
XP_057775532.1 |
Pfam | PF00023 |
Ank | Repeat | 108 | 130 | 6.7e-20 | 70.8 | Ankyrin repeat |
XP_057775532.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 108 | 130 | 4.4e-19 | 67.1 | Ankyrin repeat |
XP_057775532.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 114 | 194 | 8.2e-44 | 148.8 | Ankyrin repeats (3 copies) |
XP_057775532.1 |
Pfam | PF00023 |
Ank | Repeat | 144 | 165 | 6.7e-20 | 70.8 | Ankyrin repeat |
XP_057775532.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 147 | 194 | 2e-17 | 63.5 | Ankyrin repeats (many copies) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。