Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004582`

染色体: Chr07 坐标: 58637321-58640575 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004582`
名称	SmilChr07G004582
描述	ankyrin repeat-containing protein ITN1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58637321 - 58640575 / `-`

ID 对照

NCBI Gene ID	`LOC130994517`
GeneID	`130994517`
locus_tag	`-`
NCBI Name	`LOC130994517`
原始查询	`LOC130994517`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein ITN1-like
产物	ankyrin repeat-containing protein ITN1-like
Arabidopsis	`AT5G54700` (AT5G54700) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835559] identity=26.2; qcov=0.854; evalue=2.01e-13; confidence=low
Rice	`Os11g0434400` - identity=26.2; qcov=0.922; evalue=2.19e-12; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130994517

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057775543.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057775543.1`
3	Nucleus	细胞核	0.00000	`XP_057775543.1`
4	Chromosome	染色体	0.00000	`XP_057775543.1`
5	Centromere	着丝粒	0.00000	`XP_057775543.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58637342`	`C`	`CGG`	2bp_insertion	frameshift_variant	53	A10,A11,A18,A20,A21,A22,A23,B1,B105,B106,B108,B11,B112,B119,B12,B120,B125,B129,B13,B131,B135,B139,B23,B33,B42,B43,B46,B58,B60,B62,B78,B80,B86,B89,B95,B97,B99,C10,C16,C2,C27,C3,C30,C46,C48,C54,C58,C59,C71,C80,D1,D10,D6
`Chr7:58637343`	`A`	`AC`	1bp_insertion	frameshift_variant	53	A10,A11,A18,A20,A21,A22,A23,B1,B105,B106,B108,B11,B112,B119,B12,B120,B125,B129,B13,B131,B135,B139,B23,B33,B42,B43,B46,B58,B60,B62,B78,B80,B86,B89,B95,B97,B99,C10,C16,C2,C27,C3,C30,C46,C48,C54,C58,C59,C71,C80,D1,D10,D6
`Chr7:58637938`	`TAC`	`T`	2bp_deletion	frameshift_variant	38	A10,A11,A18,A21,A22,A23,B105,B108,B11,B112,B12,B120,B125,B129,B131,B139,B23,B33,B42,B43,B60,B62,B78,B80,B89,B95,B97,B99,C2,C46,C48,C54,C58,C59,C71,C80,D1,D10
`Chr7:58637943`	`G`	`GTC`	2bp_insertion	frameshift_variant	38	A10,A11,A18,A21,A22,A23,B105,B108,B11,B112,B12,B120,B125,B129,B131,B139,B23,B33,B42,B43,B60,B62,B78,B80,B89,B95,B97,B99,C2,C46,C48,C54,C58,C59,C71,C80,D1,D10
`Chr7:58637969`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B110,B93,C46,C6,C79
`Chr7:58637989`	`C`	`CG`	1bp_insertion	frameshift_variant	2	B134,B91
`Chr7:58637989`	`C`	`CG`	1bp_insertion	CDS_variant	2	B134,B91
`Chr7:58638148`	`T`	`TC`	1bp_insertion	frameshift_variant	33	A10,A11,A21,A22,A23,B1,B106,B108,B11,B120,B125,B13,B135,B23,B33,B42,B43,B46,B58,B62,B78,B80,B86,B89,B95,B99,C16,C3,C30,C48,C54,D1,D6
`Chr7:58640043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B105,B124,B97,C51,C80
`Chr7:58640063`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B127,B56,B96
`Chr7:58640075`	`TC`	`T`	1bp_deletion	frameshift_variant	34	A18,A21,A24,A6,B1,B101,B118,B121,B127,B128,B2,B30,B34,B36,B47,B48,B7,B75,B76,B84,C1,C13,C14,C18,C27,C28,C38,C4,C42,C43,C8,C87,D7,D9
`Chr7:58640086`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B49,B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775543.1

219 aa

110

219

Ank_2

Ank_4

Ank

Ank_3

PGG

PF12796 Ank_2 24-86 aa PF13637 Ank_4 31-80 aa PF00023 Ank 59-81 aa PF13606 Ank_3 59-83 aa PF13962 PGG 134-200 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775543.1`	Pfam	`PF12796`	Ank_2	Repeat	24	86	3.7e-12	47.4	Ankyrin repeats (3 copies)
`XP_057775543.1`	Pfam	`PF13637`	Ank_4	Repeat	31	80	1.2e-08	35.8	Ankyrin repeats (many copies)
`XP_057775543.1`	Pfam	`PF00023`	Ank	Repeat	59	81	2.7e-10	40.6	Ankyrin repeat
`XP_057775543.1`	Pfam	`PF13606`	Ank_3	Repeat	59	83	8.9e-11	41.6	Ankyrin repeat
`XP_057775543.1`	Pfam	`PF13962`	PGG	Domain	134	200	1.3e-16	61.2	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919560.1
GAAGAAAGAAACTAAGAAACTAGCTAGAGAGAGAGAGAGGGGAAAAAAGAAAGAAAGCCATCAATATATATTTAGTGGGGAAGAATGGTGGGAGAAACAGTAGAAAAGAAACTCTACAATGCTGCATCAAATGGGGATCTAACAACACTTGAACAACTGCTTCAAGAAGATCCATATCTTGTTCATGAAGCCCCATTTGCCTATTCAAGAAATCTTCTACACGTAGCAGCAATGCATGGCCAAGCAGCCATCGTTGAAAA...

CDS

1 records

下载 CDS FASTA

LOC130994517
ATGGGCATGTCCACATCTTGGAGGAGCTGCTTCAAGAGAGTCCTTTGCCTGCTATATATGGAGAGACTGCATCGCGGGCAGACTGTGTTTCACCTGTGTGTGAAATACGGTCAGCTTACGACATTGAAGGTTTTGGTGGAGAAATTGGGAGAGCTTGTGCGTGCAAAGGATGATGATGGGGAGACACTCTTGCATTTGGCTGCAAGGTCCAATCAGCTTGAGATTGTAAAATACTTGGTGGAATACAAAATAACGACGAC...

Protein

1 records

下载 Protein FASTA

XP_057775543.1
MGMSTSWRSCFKRVLCLLYMERLHRGQTVFHLCVKYGQLTTLKVLVEKLGELVRAKDDDGETLLHLAARSNQLEIVKYLVEYKITTTQTANSMGKIELKILNEKESPRDTSRYSEIKNMLKKLPDPSEMLPARMGESVLVALVLIATMAFQAGIAPPSGVSDAGEAILASTDRVLYNVFVFFNTIAFIVSLVTVMLIMTGLPSRSFRFEFEGLPSGMRE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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