当前解析结果
SmilChr07G004586| 统一新 Gene ID | SmilChr07G004586 |
|---|---|
| 名称 | SmilChr07G004586 |
| 描述 | ankyrin repeat-containing protein At2g01680-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58675578 - 58676478 / - |
| NCBI Gene ID | LOC130994519 |
|---|---|
| GeneID | 130994519 |
| locus_tag | - |
| NCBI Name | LOC130994519 |
| 原始查询 | LOC130994519 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At2g01680-like |
| 产物 | ankyrin repeat-containing protein At2g01680-like |
| Arabidopsis | AT2G01680 (AT2G01680)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:814697] identity=29.4; qcov=1.07; evalue=2.03e-13; confidence=low |
| Rice | Os09g0334900- identity=33.7; qcov=0.558; evalue=1.46e-11; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994519 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057775545.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057775545.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775545.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775545.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775545.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58675591 |
A |
AAC |
2bp_insertion | frameshift_variant | 2 | B113,B93 |
Chr7:58675591 |
A |
AAC |
2bp_insertion | CDS_variant | 2 | B113,B93 |
Chr7:58675613 |
GC |
G |
1bp_deletion | frameshift_variant | 4 | A16,A21,B75,C4 |
Chr7:58675613 |
GC |
G |
1bp_deletion | CDS_variant | 4 | A16,A21,B75,C4 |
Chr7:58675637 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B67,C79 |
Chr7:58675637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,C79 |
Chr7:58675652 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr7:58675679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr7:58675690 |
T |
TTC |
2bp_insertion | frameshift_variant | 1 | B32 |
Chr7:58675690 |
T |
TTC |
2bp_insertion | CDS_variant | 1 | B32 |
Chr7:58676092 |
A |
AAG |
2bp_insertion | frameshift_variant | 89 | A11,A13,A16,A2,A21,A22,A23,A24,A3,A7,B1,B10,B104,B105,B106,B108,B109,B11,B112,B115,B120,B121,B126,B128,B13,B130,B131,B136,B137,B139,B14,B15,B23,B27,B28,B32,B34,B36,B38,B39,B42,B43,B46,B47,B5,B56,B58,B60,B62,B66,B7,B75,B78,B80,B82,B86,B89,B90,B92,B93,B95,B96,B98,B99,C13,C16,C27,C30,C33,C38,C40,C42,C46,C47,C48,C53,C54,C57,C64,C66,C71,C73,C75,C8,C83,D1,D11,D2,D4 |
Chr7:58676098 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B140,B26,B28,C57,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775545.1PF12796
Ank_2 17-76 aa
PF00023
Ank 23-41 aa
PF12796
Ank_2 25-111 aa
PF00023
Ank 55-76 aa
PF00023
Ank 89-110 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775545.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 17 | 76 | 9.9e-26 | 90.9 | Ankyrin repeats (3 copies) |
XP_057775545.1 |
Pfam | PF00023 |
Ank | Repeat | 23 | 41 | 3.9e-15 | 55.8 | Ankyrin repeat |
XP_057775545.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 25 | 111 | 9.9e-26 | 90.9 | Ankyrin repeats (3 copies) |
XP_057775545.1 |
Pfam | PF00023 |
Ank | Repeat | 55 | 76 | 3.9e-15 | 55.8 | Ankyrin repeat |
XP_057775545.1 |
Pfam | PF00023 |
Ank | Repeat | 89 | 110 | 3.9e-15 | 55.8 | Ankyrin repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。