Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003638`

染色体: Chr07 坐标: 43094105-43096880 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003638`
名称	SmilChr07G003638
描述	probable calcium-binding protein CML18
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	43094105 - 43096880 / `+`

ID 对照

NCBI Gene ID	`LOC130994562`
GeneID	`130994562`
locus_tag	`-`
NCBI Name	`LOC130994562`
原始查询	`LOC130994562`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable calcium-binding protein CML18
产物	probable calcium-binding protein CML18
Arabidopsis	`AT1G32250` (AT1G32250) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:840117] identity=75.8; qcov=1.01; evalue=5.79e-87; confidence=high
Rice	`Os01g0505600` (OsCML11) - identity=80.6; qcov=0.945; evalue=1.34e-81; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0030234 (enzyme regulator activity)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:130994562

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057775589.1`
2	Cytoplasm	细胞质	0.40000	`XP_057775589.1`
3	Vacuole	液泡	0.40000	`XP_057775589.1`
4	Nucleus	细胞核	0.00000	`XP_057775589.1`
5	Chromosome	染色体	0.00000	`XP_057775589.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:43094683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr7:43094764`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B123,B19,B67,C39,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775589.1

164 aa

164

EF-hand_8

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_1

EF-hand_8

EF-hand_1

EF-hand_5

PF13833 EF-hand_8 16-35 aa PF13499 EF-hand_7 16-78 aa PF00036 EF-hand_1 17-45 aa PF13405 EF-hand_6 17-46 aa PF13202 EF-hand_5 18-41 aa PF13833 EF-hand_8 40-78 aa PF13202 EF-hand_5 54-77 aa PF13833 EF-hand_8 90-113 aa PF13499 EF-hand_7 91-154 aa PF13405 EF-hand_6 93-122 aa PF13202 EF-hand_5 94-115 aa PF00036 EF-hand_1 94-121 aa PF13833 EF-hand_8 107-153 aa PF00036 EF-hand_1 131-156 aa PF13202 EF-hand_5 134-152 aa

XP_057775590.1

164 aa

164

EF-hand_8

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_1

EF-hand_8

EF-hand_1

EF-hand_5

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775589.1`	Pfam	`PF13833`	EF-hand_8	Domain	16	35	4.5e-28	97.5	EF-hand domain pair
`XP_057775589.1`	Pfam	`PF13499`	EF-hand_7	Domain	16	78	4.2e-38	130.3	EF-hand domain pair
`XP_057775589.1`	Pfam	`PF00036`	EF-hand_1	Domain	17	45	2.2e-33	112.0	EF hand domain
`XP_057775589.1`	Pfam	`PF13405`	EF-hand_6	Domain	17	46	1.2e-28	96.7	EF-hand domain
`XP_057775589.1`	Pfam	`PF13202`	EF-hand_5	Domain	18	41	9.1e-24	82.5	EF hand
`XP_057775589.1`	Pfam	`PF13833`	EF-hand_8	Domain	40	78	4.5e-28	97.5	EF-hand domain pair
`XP_057775589.1`	Pfam	`PF13202`	EF-hand_5	Domain	54	77	9.1e-24	82.5	EF hand
`XP_057775589.1`	Pfam	`PF13833`	EF-hand_8	Domain	90	113	4.5e-28	97.5	EF-hand domain pair
`XP_057775589.1`	Pfam	`PF13499`	EF-hand_7	Domain	91	154	4.2e-38	130.3	EF-hand domain pair
`XP_057775589.1`	Pfam	`PF13405`	EF-hand_6	Domain	93	122	1.2e-28	96.7	EF-hand domain
`XP_057775589.1`	Pfam	`PF13202`	EF-hand_5	Domain	94	115	9.1e-24	82.5	EF hand
`XP_057775589.1`	Pfam	`PF00036`	EF-hand_1	Domain	94	121	2.2e-33	112.0	EF hand domain
`XP_057775589.1`	Pfam	`PF13833`	EF-hand_8	Domain	107	153	4.5e-28	97.5	EF-hand domain pair
`XP_057775589.1`	Pfam	`PF00036`	EF-hand_1	Domain	131	156	2.2e-33	112.0	EF hand domain
`XP_057775589.1`	Pfam	`PF13202`	EF-hand_5	Domain	134	152	9.1e-24	82.5	EF hand
`XP_057775590.1`	Pfam	`PF13833`	EF-hand_8	Domain	16	35	4.5e-28	97.5	EF-hand domain pair
`XP_057775590.1`	Pfam	`PF13499`	EF-hand_7	Domain	16	78	4.2e-38	130.3	EF-hand domain pair
`XP_057775590.1`	Pfam	`PF00036`	EF-hand_1	Domain	17	45	2.2e-33	112.0	EF hand domain
`XP_057775590.1`	Pfam	`PF13405`	EF-hand_6	Domain	17	46	1.2e-28	96.7	EF-hand domain
`XP_057775590.1`	Pfam	`PF13202`	EF-hand_5	Domain	18	41	9.1e-24	82.5	EF hand
`XP_057775590.1`	Pfam	`PF13833`	EF-hand_8	Domain	40	78	4.5e-28	97.5	EF-hand domain pair
`XP_057775590.1`	Pfam	`PF13202`	EF-hand_5	Domain	54	77	9.1e-24	82.5	EF hand
`XP_057775590.1`	Pfam	`PF13833`	EF-hand_8	Domain	90	113	4.5e-28	97.5	EF-hand domain pair
`XP_057775590.1`	Pfam	`PF13499`	EF-hand_7	Domain	91	154	4.2e-38	130.3	EF-hand domain pair
`XP_057775590.1`	Pfam	`PF13405`	EF-hand_6	Domain	93	122	1.2e-28	96.7	EF-hand domain
`XP_057775590.1`	Pfam	`PF13202`	EF-hand_5	Domain	94	115	9.1e-24	82.5	EF hand
`XP_057775590.1`	Pfam	`PF00036`	EF-hand_1	Domain	94	121	2.2e-33	112.0	EF hand domain
`XP_057775590.1`	Pfam	`PF13833`	EF-hand_8	Domain	107	153	4.5e-28	97.5	EF-hand domain pair
`XP_057775590.1`	Pfam	`PF00036`	EF-hand_1	Domain	131	156	2.2e-33	112.0	EF hand domain
`XP_057775590.1`	Pfam	`PF13202`	EF-hand_5	Domain	134	152	9.1e-24	82.5	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009091792.1
ACTATAAAAAAAAGAATTAAATCTATCTACTACGTGTTGTCAAACAACAAACAAAATAAAACGGCATTTCTCGATTTTCATTTCCATAACCCCCGACAAAAAAAATGTTGAATTTAGATCCGATTCATCAGCTTCGTTGATAATTTCTTCTACAAGCAATTCGGCCTTACCCCTCGAAAGTGGTGGATCATTAACAGAAACCAAAAAAAAATAGAGGAAGAAACATCAGCTGTGAAAGAAGATAATAGAGTGTTGGCAAT...

XR_009091793.1
ACTATAAAAAAAAGAATTAAATCTATCTACTACGTGTTGTCAAACAACAAACAAAATAAAACGGCATTTCTCGATTTTCATTTCCATAACCCCCGACAAAAAAAATGTTGAATTTAGATCCGATTCATCAGCTTCGTTGATAATTTCTTCTACAAGCAATTCGGCCTTACCCCTCGAAAGTGGTGGATCATTAACAGAAACCAAAAAAAAATAGAGGAAGAAACATCAGCTGTGAAAGAAGATAATAGAGTGTTGGCAAT...

CDS

2 records

下载 CDS FASTA

LOC130994562
ATGAACAGTAAAGAACCGGCCGTGAAATTGGATGACGAGCAGTTGACGGAGCTGCGGGAGATATTCCGGTCGTTCGACCGGAACAACGACGGCAGCCTGACGGAGCTGGAGCTCGGCTCGCTGCTTCGGTCGCTCGGGTTGAAGCCGAGCCCCGACCAGATCGACGCGCTCATCCAGAAGGCCGACACCAACAGCAATGGCTTGGTGGAGTTCTCGGAGTTCGTGGCGCTGGTGGCGCCGGAGCTCCTACCGGCGAAGTC...

Protein

2 records

下载 Protein FASTA

XP_057775589.1
MNSKEPAVKLDDEQLTELREIFRSFDRNNDGSLTELELGSLLRSLGLKPSPDQIDALIQKADTNSNGLVEFSEFVALVAPELLPAKSPYTEEQLRHLFKMFDRDGNGYITAAELAHSMAKLGHALTAEELTGMIREADTDGDGRISFQEFSQAITSAAFDNSWA

XP_057775590.1
MNSKEPAVKLDDEQLTELREIFRSFDRNNDGSLTELELGSLLRSLGLKPSPDQIDALIQKADTNSNGLVEFSEFVALVAPELLPAKSPYTEEQLRHLFKMFDRDGNGYITAAELAHSMAKLGHALTAEELTGMIREADTDGDGRISFQEFSQAITSAAFDNSWA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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