当前解析结果
SmilChr07G003884| 统一新 Gene ID | SmilChr07G003884 |
|---|---|
| 名称 | SmilChr07G003884 |
| 描述 | protein NUCLEOLAR FACTOR 1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 48486672 - 48504226 / - |
| NCBI Gene ID | LOC130994586 |
|---|---|
| GeneID | 130994586 |
| locus_tag | - |
| NCBI Name | LOC130994586 |
| 原始查询 | LOC130994586 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NUCLEOLAR FACTOR 1-like |
| 产物 | protein NUCLEOLAR FACTOR 1-like |
| Arabidopsis | AT1G17690 (NOF1)U3 small nucleolar RNA-associated protein [Source:NCBI gene (formerly Entrezgene);Acc:838345] identity=57.6; qcov=0.998; evalue=0; confidence=high |
| Rice | Os05g0295100- identity=50.7; qcov=0.986; evalue=0; confidence=high |
| GO | GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0005730 (nucleolus); GO:0019843 (rRNA binding); GO:0032040 (small-subunit processome); GO:0034511 (U3 snoRNA binding) |
| KEGG | - |
| Pfam | PF06862 (Utp25_C); PF22916 (UTP25_NTPase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994586 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775615.1 |
| 2 | Nucleolus | 核仁 | 1.00000 | XP_057775615.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057775615.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775615.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775615.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:48486854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B55,B8,C32 |
Chr7:48487434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr7:48487451 |
GAA |
G |
2bp_deletion | frameshift_variant | 7 | A1,B27,B95,C21,C55,C86,D3 |
Chr7:48487466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B30,B50,C34,C73,D1 |
Chr7:48487488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B121,B20,C69,D2 |
Chr7:48487489 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B43,B66 |
Chr7:48487590 |
G |
A |
EMS_canonical_SNV | stop_gained | 27 | A5,B11,B126,B132,B17,B18,B29,B30,B36,B50,B55,B57,B77,B79,B83,C14,C22,C59,C67,C74,C75,C77,C83,C9,D1,D3,D5 |
Chr7:48487594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,B24,B44,D4 |
Chr7:48488040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B92 |
Chr7:48488074 |
AT |
A |
1bp_deletion | frameshift_variant | 4 | A24,B121,B34,B64 |
Chr7:48488074 |
AT |
A |
1bp_deletion | CDS_variant | 4 | A24,B121,B34,B64 |
Chr7:48488090 |
TGA |
T |
2bp_deletion | frameshift_variant | 2 | B51,B87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775615.1PF22916
UTP25_NTPase-like 146-435 aa
PF06862
Utp25_C 446-623 aa
XP_057775616.1PF22916
UTP25_NTPase-like 146-435 aa
PF06862
Utp25_C 446-623 aa
XP_057775617.1PF22916
UTP25_NTPase-like 146-435 aa
PF06862
Utp25_C 446-623 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775615.1 |
Pfam | PF22916 |
UTP25_NTPase-like | Domain | 146 | 435 | 2.6e-99 | 332.7 | UTP25, NTP hydrolase-like domain |
XP_057775615.1 |
Pfam | PF06862 |
Utp25_C | Domain | 446 | 623 | 4.6e-58 | 196.7 | Utp25, C-terminal domain |
XP_057775616.1 |
Pfam | PF22916 |
UTP25_NTPase-like | Domain | 146 | 435 | 2.6e-99 | 332.7 | UTP25, NTP hydrolase-like domain |
XP_057775616.1 |
Pfam | PF06862 |
Utp25_C | Domain | 446 | 623 | 4.6e-58 | 196.7 | Utp25, C-terminal domain |
XP_057775617.1 |
Pfam | PF22916 |
UTP25_NTPase-like | Domain | 146 | 435 | 2.6e-99 | 332.7 | UTP25, NTP hydrolase-like domain |
XP_057775617.1 |
Pfam | PF06862 |
Utp25_C | Domain | 446 | 623 | 4.6e-58 | 196.7 | Utp25, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。