当前解析结果
SmilChr07G003909| 统一新 Gene ID | SmilChr07G003909 |
|---|---|
| 名称 | SmilChr07G003909 |
| 描述 | guard cell S-type anion channel SLAC1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 49286317 - 49290029 / + |
| NCBI Gene ID | LOC130994612 |
|---|---|
| GeneID | 130994612 |
| locus_tag | - |
| NCBI Name | LOC130994612 |
| 原始查询 | LOC130994612 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | guard cell S-type anion channel SLAC1 |
| 产物 | guard cell S-type anion channel SLAC1 |
| Arabidopsis | AT1G12480 (OZS1)C4-dicarboxylate transporter/malic acid transport protein [Source:NCBI gene (formerly Entrezgene);Acc:837805] identity=66.6; qcov=0.995; evalue=0; confidence=high |
| Rice | Os04g0574700 (SLAC1)- identity=62.6; qcov=1.04; evalue=0; confidence=high |
| GO | GO:0006873 (intracellular monoatomic ion homeostasis); GO:0008308 (voltage-gated monoatomic anion channel activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport); GO:0090332 (stomatal closure) |
| KEGG | - |
| Pfam | PF03595 (SLAC1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994612 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057775650.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057775650.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775650.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775650.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775650.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:49286526 |
AG |
A |
1bp_deletion | frameshift_variant | 145 | A10,A11,A14,A16,A18,A19,A2,A20,A21,A24,A3,A4,A7,A8,A9,B100,B101,B104,B105,B108,B11,B112,B113,B114,B115,B118,B119,B120,B121,B122,B123,B124,B125,B128,B129,B130,B133,B135,B14,B140,B15,B16,B18,B20,B22,B25,B27,B29,B3,B31,B35,B37,B40,B41,B42,B43,B44,B46,B48,B5,B50,B51,B58,B65,B67,B68,B69,B71,B72,B73,B76,B78,B79,B80,B81,B83,B84,B89,B94,B98,C1,C10,C11,C12,C13,C14,C16,C17,C2,C23,C24,C25,C27,C29,C3,C30,C31,C32,C33,C34,C35,C37,C38,C40,C41,C42,C44,C46,C47,C48,C49,C50,C51,C54,C55,C56,C57,C58,C59,C6,C60,C64,C66,C67,C68,C69,C7,C70,C72,C77,C78,C79,C80,C82,C83,C84,C85,C87,C9,D1,D10,D11,D6,D8,D9 |
Chr7:49286572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C31,C85 |
Chr7:49286573 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr7:49286586 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr7:49286721 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B27,B50 |
Chr7:49286770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B123,B19 |
Chr7:49286978 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:49288071 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:49288101 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr7:49288224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr7:49288257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,C32,C68 |
Chr7:49288299 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,B61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057775650.1PF03595
SLAC1 199-504 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775650.1 |
Pfam | PF03595 |
SLAC1 | Family | 199 | 504 | 2.7e-44 | 152.4 | Voltage-dependent anion channel |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。