当前解析结果
SmilChr07G003914| 统一新 Gene ID | SmilChr07G003914 |
|---|---|
| 名称 | SmilChr07G003914 |
| 描述 | probable sugar phosphate/phosphate translocator At1g12500 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 49390677 - 49392415 / - |
| NCBI Gene ID | LOC130994615 |
|---|---|
| GeneID | 130994615 |
| locus_tag | - |
| NCBI Name | LOC130994615 |
| 原始查询 | LOC130994615 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable sugar phosphate/phosphate translocator At1g12500 |
| 产物 | probable sugar phosphate/phosphate translocator At1g12500 |
| Arabidopsis | AT1G12500 (AT1G12500)Nucleotide-sugar transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:837807] identity=74.7; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0286300- identity=66.4; qcov=0.847; evalue=5.86e-142; confidence=high |
| GO | GO:0005794 (Golgi apparatus); GO:0015297 (antiporter activity) |
| KEGG | - |
| Pfam | PF00892 (EamA); PF03151 (TPT); PF08449 (UAA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994615 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057775654.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057775654.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775654.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775654.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775654.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:49391030 |
CCG |
C |
2bp_deletion | frameshift_variant | 1 | A24 |
Chr7:49391030 |
CCG |
C |
2bp_deletion | CDS_variant | 1 | A24 |
Chr7:49391115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,B130,B64 |
Chr7:49391287 |
GGC |
G |
2bp_deletion | frameshift_variant | 11 | A18,A6,A8,B3,B61,B74,B87,C30,C45,C54,C72 |
Chr7:49391368 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B125 |
Chr7:49391368 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B125 |
Chr7:49391373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,B19,B25,D4 |
Chr7:49391374 |
CG |
C |
1bp_deletion | frameshift_variant | 89 | A1,A16,A18,A22,A23,A25,A5,A8,B103,B105,B108,B109,B114,B125,B130,B131,B135,B137,B139,B2,B20,B26,B27,B28,B29,B31,B32,B35,B36,B37,B39,B4,B42,B44,B46,B5,B51,B52,B55,B56,B59,B64,B67,B68,B72,B73,B74,B75,B77,B8,B80,B82,B84,B85,B89,B95,B96,C10,C12,C18,C2,C20,C22,C23,C24,C27,C28,C29,C30,C34,C37,C44,C45,C50,C53,C54,C55,C56,C58,C66,C7,C71,C72,C80,C81,C9,D3,D6,D7 |
Chr7:49391379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,B75 |
Chr7:49391386 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr7:49391433 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr7:49391441 |
CG |
C |
1bp_deletion | frameshift_variant | 42 | A13,A15,A7,A8,A9,B102,B108,B117,B118,B121,B128,B130,B138,B19,B2,B22,B25,B38,B39,B45,B49,B60,B61,B63,B72,C11,C16,C20,C22,C23,C26,C44,C48,C60,C69,C70,C72,C74,C80,D4,D5,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775654.1PF03151
TPT 52-341 aa
PF08449
UAA 69-343 aa
PF00892
EamA 80-188 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775654.1 |
Pfam | PF03151 |
TPT | Family | 52 | 341 | 3.9e-46 | 158.4 | Triose-phosphate Transporter family |
XP_057775654.1 |
Pfam | PF08449 |
UAA | Family | 69 | 343 | 9.2e-11 | 42.1 | UAA transporter family |
XP_057775654.1 |
Pfam | PF00892 |
EamA | Domain | 80 | 188 | 4.6e-12 | 47.1 | EamA-like transporter family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。