Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003926`

染色体: Chr07 坐标: 49558884-49564965 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003926`
名称	SmilChr07G003926
描述	uncharacterized SmilChr07G003926
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	49558884 - 49564965 / `-`

ID 对照

NCBI Gene ID	`LOC130994623`
GeneID	`130994623`
locus_tag	`-`
NCBI Name	`LOC130994623`
原始查询	`LOC130994623`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837809]; symbol=AT1G12530; hit=AT1G12530; species=arabidopsis; confidence=medium
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837809]; symbol=AT1G12530; hit=AT1G12530; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G12530` (AT1G12530) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837809] identity=44.1; qcov=0.977; evalue=7.91e-48; confidence=medium
Rice	`Os03g0228500` - identity=32.2; qcov=1.04; evalue=6.4e-25; confidence=low
GO	-
KEGG	-
Pfam	PF05205 (COMPASS-Shg1)
InterPro	-
eggNOG	-
NR	GeneID:130994623

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775666.1`
2	Cytoplasm	细胞质	0.20000	`XP_057775666.1`
3	Chromosome	染色体	0.00000	`XP_057775667.1`
4	Centromere	着丝粒	0.00000	`XP_057775667.1`
5	Chromatin	染色质	0.00000	`XP_057775667.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:49560315`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr7:49560321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:49560331`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr7:49560344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr7:49560607`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,B35
`Chr7:49560899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:49560948`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr7:49564684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775666.1

220 aa

110

220

COMPASS-Shg1

PF05205 COMPASS-Shg1 19-111 aa

XP_057775667.1

218 aa

109

218

COMPASS-Shg1

PF05205 COMPASS-Shg1 19-109 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775666.1`	Pfam	`PF05205`	COMPASS-Shg1	Family	19	111	5e-07	31.1	COMPASS (Complex proteins associated with Set1p) component shg1
`XP_057775667.1`	Pfam	`PF05205`	COMPASS-Shg1	Family	19	109	4.8e-06	28.0	COMPASS (Complex proteins associated with Set1p) component shg1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

18 records

下载 cDNA FASTA

XR_009091836.1
AAATATATAGAATTGGATTTTAGGTTTTATGATTCGAACCTCGGTTGGGGGAGCTGCCATTTATGGTTGCTGTAAATTGTATATAATCCTAAACAAGATCGCAGAAATTCTGTCTCAATTCCTTCTCCTTTCGATAGCTTCCCCTTTTTTCTTGTCTTCTCCGCTTTTCTTTCGCGTAGGAAATCACCAAATCGCAGCGCACAACGGATGTCTATGTGAACACTTTTACGCATATTGGGTCTACAAACACCGATGCTAAA...

XR_009091837.1
AAATATATAGAATTGGATTTTAGGTTTTATGATTCGAACCTCGGTTGGGGGAGCTGCCATTTATGGTTGCTGTAAATTGTATATAATCCTAAACAAGATCGCAGAAATTCTGTCTCAATTCCTTCTCCTTTCGATAGCTTCCCCTTTTTTCTTGTCTTCTCCGCTTTTCTTTCGCGTAGGAAATCACCAAATCGCAGCGCACAACGGATGTCTATGTGAACACTTTTACGCATATTGGGTCTACAAACACCGATGCTAAA...

CDS

2 records

下载 CDS FASTA

LOC130994623
ATGCTAAATACGAGCTTCAACGGCAGCGGCGGCCGTGTAAAAGCTGAGGATGTAATTTCGAAGCTCAAAGACGACGGTGATTTCGATCGGCTTCGTCGAAAGATCATCCGTAAACTCAAGGAAGAATTGCGAAGCAATATTATATCAATGGTGAAACAATCAGTATCACTAAGTCGTCCAGGCGCTGAGTCTATGAAACCACGCCAGCTTTCTGATGCAATACACCAAGAAATTGGGGACAAACTGATGAACCAAATATC...

LOC130994623
ATGCTAAATACGAGCTTCAACGGCAGCGGCGGCCGTGTAAAAGCTGAGGATGTAATTTCGAAGCTCAAAGACGACGGTGATTTCGATCGGCTTCGTCGAAAGATCATCCGTAAACTCAAGGTTAATGAAGAATTGCGAAGCAATATTATATCAATGGTGAAACAATCAGTATCACTAAGTCGTCCAGGCGCTGAGTCTATGAAACCACGCCAGCTTTCTGATGCAATACACCAAGAAATTGGGGACAAACTGATGAACCA...

Protein

2 records

下载 Protein FASTA

XP_057775666.1
MLNTSFNGSGGRVKAEDVISKLKDDGDFDRLRRKIIRKLKVNEELRSNIISMVKQSVSLSRPGAESMKPRQLSDAIHQEIGDKLMNQISDGLWNIIRSADGMQPEIKETVQSVYDKLSNPEGKVNAVGTLTDEELNDPPGFGPTERRNKDQMNQTNNIGRPNRRKRKAIEENKGDKSQLEDLAEPDNLDYGAPPGFSSVLKHKHSVDASDEDPDVPPGFG

XP_057775667.1
MLNTSFNGSGGRVKAEDVISKLKDDGDFDRLRRKIIRKLKEELRSNIISMVKQSVSLSRPGAESMKPRQLSDAIHQEIGDKLMNQISDGLWNIIRSADGMQPEIKETVQSVYDKLSNPEGKVNAVGTLTDEELNDPPGFGPTERRNKDQMNQTNNIGRPNRRKRKAIEENKGDKSQLEDLAEPDNLDYGAPPGFSSVLKHKHSVDASDEDPDVPPGFG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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