当前解析结果
SmilChr07G003927| 统一新 Gene ID | SmilChr07G003927 |
|---|---|
| 名称 | SmilChr07G003927 |
| 描述 | endoglucanase 25-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 49578592 - 49582525 / + |
| NCBI Gene ID | LOC130994624 |
|---|---|
| GeneID | 130994624 |
| locus_tag | - |
| NCBI Name | LOC130994624 |
| 原始查询 | LOC130994624 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | endoglucanase 25-like |
| 产物 | endoglucanase 25-like |
| Arabidopsis | AT5G49720 (GH9A1)glycosyl hydrolase 9A1 [Source:NCBI gene (formerly Entrezgene);Acc:835035] identity=79.5; qcov=0.985; evalue=0; confidence=high |
| Rice | Os03g0329500 (OsCel9D)- identity=76.8; qcov=0.984; evalue=0; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process) |
| KEGG | smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00759 (Glyco_hydro_9) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994624 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057775668.1 |
| 2 | Membrane raft | 膜筏 | 0.40000 | XP_057775668.1 |
| 3 | Cell projection | 细胞突起 | 0.20000 | XP_057775668.1 |
| 4 | Axon | Axon | 0.20000 | XP_057775668.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057775668.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:49579084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr7:49579114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,B99 |
Chr7:49579120 |
T |
TTG |
2bp_insertion | stop_gained,frameshift_variant | 1 | C13 |
Chr7:49579120 |
T |
TTG |
2bp_insertion | CDS_variant | 1 | C13 |
Chr7:49579198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C18,C2,C35 |
Chr7:49579999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr7:49580000 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:49580045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr7:49580062 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B37,B69 |
Chr7:49580270 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,B125 |
Chr7:49580823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr7:49580961 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,A21,B20,B40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057775668.1PF00759
Glyco_hydro_9 108-578 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775668.1 |
Pfam | PF00759 |
Glyco_hydro_9 | Repeat | 108 | 578 | 1.8e-146 | 489.6 | Glycosyl hydrolase family 9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。