Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003938`

染色体: Chr07 坐标: 49741737-49745194 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003938`
名称	SmilChr07G003938
描述	protein STAY-GREEN homolog, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	49741737 - 49745194 / `-`

ID 对照

NCBI Gene ID	`LOC130994634`
GeneID	`130994634`
locus_tag	`-`
NCBI Name	`LOC130994634`
原始查询	`LOC130994634`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein STAY-GREEN homolog, chloroplastic-like
产物	protein STAY-GREEN homolog%2C chloroplastic-like
Arabidopsis	`AT4G11910` (AT4G11910) STAY-GREEN-like protein [Source:NCBI gene (formerly Entrezgene);Acc:826798] identity=66.4; qcov=0.907; evalue=6.72e-115; confidence=high
Rice	`Os09g0532000` (SGR) - identity=67.9; qcov=0.792; evalue=1e-106; confidence=high
GO	-
KEGG	smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF12638 (Staygreen)
InterPro	-
eggNOG	-
NR	GeneID:130994634

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057775678.1`
2	Chloroplast thylakoid	类囊体	0.40000	`XP_057775678.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057775678.1`
4	Nucleus	细胞核	0.00000	`XP_057775678.1`
5	Chromosome	染色体	0.00000	`XP_057775678.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:49742169`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,B107
`Chr7:49742182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B135,C38,C50
`Chr7:49742313`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr7:49743275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr7:49744806`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775678.1

279 aa

140

279

Staygreen

PF12638 Staygreen 50-200 aa

XP_057775679.1

279 aa

140

279

Staygreen

PF12638 Staygreen 50-200 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775678.1`	Pfam	`PF12638`	Staygreen	Domain	50	200	1.3e-58	197.7	Staygreen protein
`XP_057775679.1`	Pfam	`PF12638`	Staygreen	Domain	50	200	1.3e-58	197.7	Staygreen protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919695.1
AATTTAAACTTTAATTCAAATTTAATTATTTCAAATTCGGCTCGAACCGTCCAAAAACTGGCTCCTCTCTCTCTCTACCCCAAAGAGTTGGCACGCATATGAATGCCAAACTTGCAAGTTTTCCAAACATAGGCATCCAAGCAAAGCTAAGAAGAAAAAAAAAAGGAAAAAGTAGAAGTCTTGGGGAAACATACCAGAAAAAGCAACACCCTGATTTTAAGGCATTCATTATTCTCCTCTTCTTCAAACTTGTAGATATC...

XM_057919696.1
CGGCTCGAACCGTCCAAAAACTGGCTCCTCTCTCTCTCTACCCCAAAGAGTTGGCACGCATATGAATGCCAAACTTGCAAGTTTTCCAAACATAGGCATCCAAGCAAAGCTAAGAAGAAAAAAAAAAGGAAAAAGTAGAAGTCTTGGGGAAACATACCAGAAAAAGCAACACCCTGATTTTAAGAATTCATTGATTTCAATTAGATGGGAACTATGGCTGCAGCCTTACTCCTCCCATCAAAATCCCCATTTACAGAAGA...

CDS

2 records

下载 CDS FASTA

LOC130994634
ATGGGAACTATGGCTGCAGCCTTACTCCTCCCATCAAAATCCCCATTTACAGAAGAAAAAAACGCCTTTTTTCTGCACAGGACAAGAAGGAGAGCCAGAAAGGATCGCTCCATCTTCCCTGTTGCAAGGTTATTTGGGCCAGCAATATTTGAGGCATCAAAGCTGAAAGTTCTGTTTTTGGGGGCAGAGAAAAAGCATCCAGGAAAGTATCCAAGAACATACACACTTACACACAGTGACATCACTTCCAAGCTCACTCT...

Protein

2 records

下载 Protein FASTA

XP_057775678.1
MGTMAAALLLPSKSPFTEEKNAFFLHRTRRRARKDRSIFPVARLFGPAIFEASKLKVLFLGAEKKHPGKYPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNKLQRDEVVAEWKKIKGKMSLHVHCHISGGHFLLDLFSRLRYYIFCKELPVVLKAFVHGDEDLFNNYPELEEALVWVYFHSNIPEFNKVECWGPLRDASAPSGGGIRDEANNAALFQGNGDGSGLDTLQPCPEDCSCCFPPMSLIPWPRHAGVVDDLA...

XP_057775679.1
MGTMAAALLLPSKSPFTEEKNAFFLHRTRRRARKDRSIFPVARLFGPAIFEASKLKVLFLGAEKKHPGKYPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNKLQRDEVVAEWKKIKGKMSLHVHCHISGGHFLLDLFSRLRYYIFCKELPVVLKAFVHGDEDLFNNYPELEEALVWVYFHSNIPEFNKVECWGPLRDASAPSGGGIRDEANNAALFQGNGDGSGLDTLQPCPEDCSCCFPPMSLIPWPRHAGVVDDLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器