Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003940`

染色体: Chr07 坐标: 49774270-49780543 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003940`
名称	SmilChr07G003940
描述	MADS-box protein SOC1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	49774270 - 49780543 / `-`

ID 对照

NCBI Gene ID	`LOC130994636`
GeneID	`130994636`
locus_tag	`-`
NCBI Name	`LOC130994636`
原始查询	`LOC130994636`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	MADS-box protein SOC1-like
产物	MADS-box protein SOC1-like
Arabidopsis	`AT2G45660` (AGL20) AGAMOUS-like 20 [Source:NCBI gene (formerly Entrezgene);Acc:819174] identity=62.57; qcov=0.792; evalue=2.52e-66; confidence=high
Rice	`Os03g0122600` (OsMADS50) - identity=60.23; qcov=0.792; evalue=3.58e-62; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:130994636

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775680.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:49774420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr7:49774525`	`G`	`A`	EMS_canonical_SNV	stop_gained	23	A3,A8,A9,B100,B106,B111,B117,B125,B67,C25,C3,C30,C37,C39,C4,C41,C50,C64,C65,C66,C77,C84,D2
`Chr7:49775053`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B61,B82,C29,D8
`Chr7:49775203`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,C4,C50,C84
`Chr7:49776140`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,A8,B3,B81
`Chr7:49776357`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775680.1

216 aa

108

216

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 87-172 aa

XP_057775681.1

208 aa

104

208

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 87-172 aa

XP_057775682.1

194 aa

194

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 87-162 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775680.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	9.8e-26	89.7	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057775680.1`	Pfam	`PF01486`	K-box	Family	87	172	1e-22	80.8	K-box region
`XP_057775681.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	4.5e-26	90.7	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057775681.1`	Pfam	`PF01486`	K-box	Family	87	172	8.8e-23	81.0	K-box region
`XP_057775682.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	4.2e-26	90.9	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057775682.1`	Pfam	`PF01486`	K-box	Family	87	162	1.3e-19	70.8	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057919698.1
GACATTAATATCGGTAGGGTTTCCACTTACAACAATCTTTATCTCTCCGTATGGATCATGTTGGGTTGTCTATATCAAGTGCTTTCGGTGAATTACCAAAACAAGAAAAATGCGATGTATGTCAACTCTCTCTAAACCATTATTTATTTCTTCTCGATCTAGCTGAAGCTTCAAACTTCTTAAACTGATAAATTATGGAGGCCAAGAATTAGCCAATCAAAACCCTGCCAGCCTGAAAATTTGCAAATCTAGGGTTTTCT...

XM_057919699.1
CACTTACAACAATCTTTATCTCTCCGTATGGATCATGTTGGGTTGTCTATATCAAGTGCTTTCGGTGAATTACCAAAACAAGAAAAATGCGATGTATGTCAACTCTCTCTAAACCATTATTTATTTCTTCTCGATCTAGCTGAAGCTTCAAACTTCTTAAACTGATAAATTATGGAGGCCAAGAATTAGCCAATCAAAACCCTGCCAGCCTGAAAATTTGCAAATCTAGGGTTTTCTGTCAATTCCTCTTATATTCCTTT...

CDS

3 records

下载 CDS FASTA

lcl|NC_080393.1_cds_XP_057775680.1_39199
ATGGTGAGGGGGAAAACTGAGATGAAAAGGATAGAAAATGCGACAAGTAGGCAGGTGACATTCTCGAAGCGGAGAAGTGGGCTGCTCAAAAAGGCTTTCGAGCTCTCAGTTCTTTGCGACGCTCAAGTTGCTCTCATCATCTTCTCTGCCAAAGGCAAACTCTACGAGTTCTCCACTTCCAGTGTGATCACTGACACAATAGAAAGGTATCAGAAAATTACGAAGGCTCGAGCAACTGAGAGAAACACTGTAGAAGAAGA...

lcl|NC_080393.1_cds_XP_057775682.1_39200
ATGGTGAGGGGGAAAACTGAGATGAAAAGGATAGAAAATGCGACAAGTAGGCAGGTGACATTCTCGAAGCGGAGAAGTGGGCTGCTCAAAAAGGCTTTCGAGCTCTCAGTTCTTTGCGACGCTCAAGTTGCTCTCATCATCTTCTCTGCCAAAGGCAAACTCTACGAGTTCTCCACTTCCAGTGTGATCACTGACACAATAGAAAGGTATCAGAAAATTACGAAGGCTCGAGCAACTGAGAGAAACACTGTAGAAGAAGA...

Protein

3 records

下载 Protein FASTA

XP_057775680.1
MVRGKTEMKRIENATSRQVTFSKRRSGLLKKAFELSVLCDAQVALIIFSAKGKLYEFSTSSVITDTIERYQKITKARATERNTVEEDMQCFKDEASGLHKKIEVLEDCKRKLLGENIDSCSFSEVEELEHKLERSLSNIRDRKNTVFKEQIDLLKEQEKHLMKEHLQLRKKVVRNTEAAIVTYCSTEGTNCRSGDSVVHRTLQSSKAQHLGFMTNE

XP_057775681.1
MVRGKTEMKRIENATSRQVTFSKRRSGLLKKAFELSVLCDAQVALIIFSAKGKLYEFSTSSVITDTIERYQKITKARATERNTVEEDMQCFKDEASGLHKKIEVLEDCKRKLLGENIDSCSFSEVEELEHKLERSLSNIRDRKNTVFKEQIDLLKEQEKHLMKEHLQLRKKCETLKLQLSPIVQPKAQTVEVETALYIGLSKAQKPNI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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