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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G003966

染色体: Chr07 坐标: 50473019-50481199 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G003966
名称SmilChr07G003966
描述SPX domain-containing membrane protein At4g22990-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向50473019 - 50481199 / -

ID 对照

NCBI Gene IDLOC130994659
GeneID130994659
locus_tag-
NCBI NameLOC130994659
原始查询LOC130994659

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述SPX domain-containing membrane protein At4g22990-like
产物SPX domain-containing membrane protein At4g22990-like
ArabidopsisAT4G11810 (AT4G11810)
Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826787]
identity=75.4; qcov=1.01; evalue=0; confidence=high
RiceOs02g0678200 (OsSPX-MFS2)
-
identity=68; qcov=1; evalue=0; confidence=high
GOGO:0009705 (plant-type vacuole membrane); GO:0022857 (transmembrane transporter activity); GO:1905011 (transmembrane phosphate ion transport from cytosol to vacuole)
KEGG-
PfamPF03105 (SPX); PF07690 (MFS_1)
InterPro-
eggNOG-
NRGeneID:130994659

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasmic vesicle 细胞质囊泡 1.00000 XP_057775704.1
2 Secretory vesicle Secretory vesicle 0.80000 XP_057775704.1
3 Endosome 内体 0.80000 XP_057775704.1
4 Vesicle 囊泡 0.60000 XP_057775704.1
5 Endosome membrane 内体膜 0.60000 XP_057775704.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:50473460 AC A 1bp_deletion frameshift_variant 1 B76
Chr7:50473460 AC A 1bp_deletion CDS_variant 1 B76
Chr7:50473473 G A EMS_canonical_SNV CDS_variant 1 B134
Chr7:50473849 G A EMS_canonical_SNV CDS_variant 1 A2
Chr7:50473863 C T EMS_canonical_SNV CDS_variant 2 B107,B55
Chr7:50473878 C T EMS_canonical_SNV CDS_variant 4 B133,B16,B45,D9
Chr7:50474757 G A EMS_canonical_SNV CDS_variant 1 C31
Chr7:50474843 C T EMS_canonical_SNV CDS_variant 2 B107,B55
Chr7:50475521 C T EMS_canonical_SNV CDS_variant 2 C5,D1
Chr7:50476310 C T EMS_canonical_SNV CDS_variant 3 B64,C17,C49
Chr7:50476461 G A EMS_canonical_SNV CDS_variant 1 B5
Chr7:50477632 C T EMS_canonical_SNV CDS_variant 2 B47,C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775704.1
696 aa
N
1
348
696
SPX
MFS_1
C
PF03105 SPX 89-146 aa PF07690 MFS_1 255-639 aa
XP_057775705.1
696 aa
N
1
348
696
SPX
MFS_1
C
PF03105 SPX 89-146 aa PF07690 MFS_1 255-639 aa
XP_057775706.1
696 aa
N
1
348
696
SPX
MFS_1
C
PF03105 SPX 89-146 aa PF07690 MFS_1 255-639 aa
XP_057775707.1
696 aa
N
1
348
696
SPX
MFS_1
C
PF03105 SPX 89-146 aa PF07690 MFS_1 255-639 aa
XP_057775708.1
696 aa
N
1
348
696
SPX
MFS_1
C
PF03105 SPX 89-146 aa PF07690 MFS_1 255-639 aa
XP_057775709.1
696 aa
N
1
348
696
SPX
MFS_1
C
PF03105 SPX 89-146 aa PF07690 MFS_1 255-639 aa
XP_057775710.1
696 aa
N
1
348
696
SPX
MFS_1
C
PF03105 SPX 89-146 aa PF07690 MFS_1 255-639 aa
XP_057775711.1
696 aa
N
1
348
696
SPX
MFS_1
C
PF03105 SPX 89-146 aa PF07690 MFS_1 255-639 aa
XP_057775712.1
696 aa
N
1
348
696
SPX
MFS_1
C
PF03105 SPX 89-146 aa PF07690 MFS_1 255-639 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057775704.1 Pfam PF03105 SPX Domain 89 146 6e-12 47.0 SPX domain
XP_057775704.1 Pfam PF07690 MFS_1 Family 255 639 1.8e-24 87.0 Major Facilitator Superfamily
XP_057775705.1 Pfam PF03105 SPX Domain 89 146 6e-12 47.0 SPX domain
XP_057775705.1 Pfam PF07690 MFS_1 Family 255 639 1.8e-24 87.0 Major Facilitator Superfamily
XP_057775706.1 Pfam PF03105 SPX Domain 89 146 6e-12 47.0 SPX domain
XP_057775706.1 Pfam PF07690 MFS_1 Family 255 639 1.8e-24 87.0 Major Facilitator Superfamily
XP_057775707.1 Pfam PF03105 SPX Domain 89 146 6e-12 47.0 SPX domain
XP_057775707.1 Pfam PF07690 MFS_1 Family 255 639 1.8e-24 87.0 Major Facilitator Superfamily
XP_057775708.1 Pfam PF03105 SPX Domain 89 146 6e-12 47.0 SPX domain
XP_057775708.1 Pfam PF07690 MFS_1 Family 255 639 1.8e-24 87.0 Major Facilitator Superfamily
XP_057775709.1 Pfam PF03105 SPX Domain 89 146 6e-12 47.0 SPX domain
XP_057775709.1 Pfam PF07690 MFS_1 Family 255 639 1.8e-24 87.0 Major Facilitator Superfamily
XP_057775710.1 Pfam PF03105 SPX Domain 89 146 6e-12 47.0 SPX domain
XP_057775710.1 Pfam PF07690 MFS_1 Family 255 639 1.8e-24 87.0 Major Facilitator Superfamily
XP_057775711.1 Pfam PF03105 SPX Domain 89 146 6e-12 47.0 SPX domain
XP_057775711.1 Pfam PF07690 MFS_1 Family 255 639 1.8e-24 87.0 Major Facilitator Superfamily
XP_057775712.1 Pfam PF03105 SPX Domain 89 146 6e-12 47.0 SPX domain
XP_057775712.1 Pfam PF07690 MFS_1 Family 255 639 1.8e-24 87.0 Major Facilitator Superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XM_057919724.1
TATCCCATTCATCTAAGATTATTGGATTTATCCATTTATTTAGAAACAAACTCATCGCATCGTATCGTATATAGCATCTGGCTGGCTCCACTCGTGGCATGAAGCGTCTATTAGTAGAGTTCTCTCTCTCCCTCAGTCTCAGCTCTCTGCTGTATTTGCCTATGCTGACACGTTAAATCACCAAAGCTGGAATTCTTCCAGAATATATGCAAAACTGAATTCGTTTCTCGAGTTAATATTCGTTTGTTGATGCTCATCTA...
XM_057919727.1
GTATTTGCCTATGCTGACACGGTACTTCATTTATGCTCCTGTGGCTGTGTTTACTTGCATAGCTCATAAAATTTGATTACCGACTGCTTCCTCTTCAGTTAAATCACCAAAGCTGGAATTCTTCCAGAATATATGCAAAACTGAATTCGTTTCTCGAGTTAATATTCGTTTGTTGATGCTCATCTAATTCAACCTACTTCCATTTCCGGCGCCACCAACTGTTGCACGTCAGAAGCCTAAGGCGTTTTAGTCACCCTTTG...

CDS

9 records

下载 CDS FASTA
LOC130994659
ATGGTTGAATTCGGGAAAAAGTTGAAGGAAAGACAAATTCAAGAATGGCAAGAGTTCTACATCAACTACAAACTAATGAAGAAAAAAGTTAAGCAGTACACTAATCAAATTGAAACTGGAGCATTGGAACAGCGAACTGCTCTCAAGGATTTCTCAAGAATGCTGGATACTCAGATTGAAAGAACTGTTCTATTTATGTTAGAACAACAAGGCCTTCTAGCGTGCAGGATTTCCCAGCTTAACAAGGAACAAGATTTCCT...
LOC130994659
ATGGTTGAATTCGGGAAAAAGTTGAAGGAAAGACAAATTCAAGAATGGCAAGAGTTCTACATCAACTACAAACTAATGAAGAAAAAAGTTAAGCAGTACACTAATCAAATTGAAACTGGAGCATTGGAACAGCGAACTGCTCTCAAGGATTTCTCAAGAATGCTGGATACTCAGATTGAAAGAACTGTTCTATTTATGTTAGAACAACAAGGCCTTCTAGCGTGCAGGATTTCCCAGCTTAACAAGGAACAAGATTTCCT...

Protein

9 records

下载 Protein FASTA
XP_057775704.1
MVEFGKKLKERQIQEWQEFYINYKLMKKKVKQYTNQIETGALEQRTALKDFSRMLDTQIERTVLFMLEQQGLLACRISQLNKEQDFLHHQPDISKISDLREAYRAVGRDLLKLLFFVEMNAIGLRKILKKFDKRLRYKFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLGDLQDHQGSYLSIYDQPSLPLQDPVVDALKAAADRLTHSTHFLNFLAQHAFIMHEELPSAAEEPSGEERYHFMSLLLNLASTFLY...
XP_057775705.1
MVEFGKKLKERQIQEWQEFYINYKLMKKKVKQYTNQIETGALEQRTALKDFSRMLDTQIERTVLFMLEQQGLLACRISQLNKEQDFLHHQPDISKISDLREAYRAVGRDLLKLLFFVEMNAIGLRKILKKFDKRLRYKFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLGDLQDHQGSYLSIYDQPSLPLQDPVVDALKAAADRLTHSTHFLNFLAQHAFIMHEELPSAAEEPSGEERYHFMSLLLNLASTFLY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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